Difference between revisions of "CPD0-2106"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.133-RXN 2.7.1.133-RXN] == * direction: ** left-to-right * common-name: ** inositol 1,3,4-trip...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] == * direction: ** left-to-right * common-name: ** dtdp-...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** dtdp-glucose 4,6-dehydratase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2 | + | ** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ10476]] |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16241]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ00231]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''5''' reactions found over '''5''' reactions in the full pathway | + | * [[PWY-6808]], dTDP-D-forosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6808 PWY-6808] |
− | * [[PWY- | + | ** '''1''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-7657]], dTDP-β-L-digitoxose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7657 PWY-7657] |
− | * [[PWY- | + | ** '''1''' reactions found over '''7''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-7104]], dTDP-L-megosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7104 PWY-7104] |
− | * [[PWY- | + | ** '''1''' reactions found over '''8''' reactions in the full pathway |
+ | * [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6973 PWY-6973] | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6974]], dTDP-L-olivose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6974 PWY-6974] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6976]], dTDP-L-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6976 PWY-6976] | ||
+ | ** '''1''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6953]], dTDP-3-acetamido-α-D-fucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6953 PWY-6953] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7414]], dTDP-α-D-mycaminose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7414 PWY-7414] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7315 PWY-7315] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7318 PWY-7318] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6942]], dTDP-D-desosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6942 PWY-6942] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7440]], dTDP-β-L-4-epi-vancosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7440 PWY-7440] | ||
+ | ** '''1''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7814]], dTDP-L-daunosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7814 PWY-7814] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-3221]]: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221] | ||
+ | ** '''1''' reactions found over '''n.a''' reactions in the full pathway | ||
+ | * [[PWY-7413]], dTDP-6-deoxy-α-D-allose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7413 PWY-7413] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7312]], dTDP-D-β-fucofuranose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7312 PWY-7312] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7316 PWY-7316] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY] | ||
** '''3''' reactions found over '''4''' reactions in the full pathway | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7688 PWY-7688] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7301]], dTDP-4-O-demethyl-β-L-noviose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7301 PWY-7301] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1] | ||
+ | ** [http://www.uniprot.org/uniprot/P44914 P44914] | ||
+ | ** [http://www.uniprot.org/uniprot/P29782 P29782] | ||
+ | ** [http://www.uniprot.org/uniprot/P27830 P27830] | ||
+ | ** [http://www.uniprot.org/uniprot/P55294 P55294] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S642 Q9S642] | ||
+ | ** [http://www.uniprot.org/uniprot/P37759 P37759] | ||
+ | ** [http://www.uniprot.org/uniprot/P26391 P26391] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59626 Q59626] | ||
+ | ** [http://www.uniprot.org/uniprot/P39630 P39630] | ||
+ | ** [http://www.uniprot.org/uniprot/P37777 P37777] | ||
+ | ** [http://www.uniprot.org/uniprot/P37761 P37761] | ||
+ | ** [http://www.uniprot.org/uniprot/Q54144 Q54144] | ||
+ | ** [http://www.uniprot.org/uniprot/Q56173 Q56173] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55420 Q55420] | ||
+ | ** [http://www.uniprot.org/uniprot/P55293 P55293] | ||
+ | ** [http://www.uniprot.org/uniprot/O66249 O66249] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4] | ||
+ | ** [http://www.uniprot.org/uniprot/O08246 O08246] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=dtdp-glucose 4,6-dehydratase}} |
− | {{#set: ec-number=ec-2 | + | {{#set: ec-number=ec-4.2.1.46}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=20}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 14:25, 26 August 2019
Contents
Reaction DTDPGLUCDEHYDRAT-RXN
- direction:
- left-to-right
- common-name:
- dtdp-glucose 4,6-dehydratase
- ec-number:
Reaction formula
- 1 DTDP-D-GLUCOSE[c] => 1 DTDP-DEOH-DEOXY-GLUCOSE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ10476
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ16241
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00231
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6808, dTDP-D-forosamine biosynthesis: PWY-6808
- 1 reactions found over 9 reactions in the full pathway
- PWY-7657, dTDP-β-L-digitoxose biosynthesis: PWY-7657
- 1 reactions found over 7 reactions in the full pathway
- PWY-7104, dTDP-L-megosamine biosynthesis: PWY-7104
- 1 reactions found over 8 reactions in the full pathway
- PWY-6973, dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: PWY-6973
- 1 reactions found over 9 reactions in the full pathway
- PWY-6974, dTDP-L-olivose biosynthesis: PWY-6974
- 1 reactions found over 7 reactions in the full pathway
- PWY-6976, dTDP-L-mycarose biosynthesis: PWY-6976
- 1 reactions found over 7 reactions in the full pathway
- PWY-6953, dTDP-3-acetamido-α-D-fucose biosynthesis: PWY-6953
- 1 reactions found over 5 reactions in the full pathway
- PWY-7414, dTDP-α-D-mycaminose biosynthesis: PWY-7414
- 1 reactions found over 5 reactions in the full pathway
- PWY-7315, dTDP-N-acetylthomosamine biosynthesis: PWY-7315
- 1 reactions found over 4 reactions in the full pathway
- PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: PWY-7318
- 1 reactions found over 5 reactions in the full pathway
- PWY-6942, dTDP-D-desosamine biosynthesis: PWY-6942
- 1 reactions found over 6 reactions in the full pathway
- PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis: PWY-7440
- 1 reactions found over 8 reactions in the full pathway
- PWY-7814, dTDP-L-daunosamine biosynthesis: PWY-7814
- 2 reactions found over 6 reactions in the full pathway
- PWY-3221: PWY-3221
- 1 reactions found over n.a reactions in the full pathway
- PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis: PWY-7413
- 1 reactions found over 4 reactions in the full pathway
- PWY-7312, dTDP-D-β-fucofuranose biosynthesis: PWY-7312
- 1 reactions found over 4 reactions in the full pathway
- PWY-7316, dTDP-N-acetylviosamine biosynthesis: PWY-7316
- 1 reactions found over 4 reactions in the full pathway
- DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis: DTDPRHAMSYN-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY-7688, dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: PWY-7688
- 1 reactions found over 6 reactions in the full pathway
- PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis: PWY-7301
- 2 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links