Difference between revisions of "CPD0-2152"

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(Created page with "Category:gene == Gene SJ20245 == * transcription-direction: ** negative * right-end-position: ** 162188 * left-end-position: ** 138517 * centisome-position: ** 65.80537...")
(Created page with "Category:gene == Gene SJ10028 == * transcription-direction: ** positive * right-end-position: ** 22637 * left-end-position: ** 21738 * centisome-position: ** 64.33455...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ20245 ==
+
== Gene SJ10028 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 162188
+
** 22637
 
* left-end-position:
 
* left-end-position:
−
** 138517
+
** 21738
 
* centisome-position:
 
* centisome-position:
−
** 65.80537    
+
** 64.33455    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[DLACTDEHYDROGNAD-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ESTRADIOL-17-BETA-DEHYDROGENASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[HBNOm]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RETINOL-DEHYDROGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12581]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17728]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[TESTOSTERONE-17-BETA-DEHYDROGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[P122-PWY]]
+
* [[PWY66-368]]
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[FERMENTATION-PWY]]
+
* [[PWY66-367]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-380]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6872]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7782]]
 
** '''11''' reactions found over '''16''' reactions in the full pathway
 
** '''11''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY4LZ-257]]
+
{{#set: transcription-direction=positive}}
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
{{#set: right-end-position=22637}}
−
* [[PWY-6454]]
+
{{#set: left-end-position=21738}}
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
{{#set: centisome-position=64.33455   }}
−
* [[PWY-6901]]
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[ALACAT2-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=162188}}
 
−
{{#set: left-end-position=138517}}
 
−
{{#set: centisome-position=65.80537   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=5}}

Revision as of 09:28, 27 August 2019

Gene SJ10028

  • transcription-direction:
    • positive
  • right-end-position:
    • 22637
  • left-end-position:
    • 21738
  • centisome-position:
    • 64.33455

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY66-368
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-367
    • 4 reactions found over 5 reactions in the full pathway
  • PWY66-380
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6872
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7782
    • 11 reactions found over 16 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD0-2152&oldid=33830"