Difference between revisions of "CPD0-2474"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6883 RXN-6883] == * direction: ** left-to-right * common-name: ** ubiquinol:oxygen oxidoreducta...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] == * direction: ** left-to-right * ec-numb...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
− | |||
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.2.1.12 ec-6.2.1.12] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[COUMARATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ03066]] |
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ16901]] |
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''3''' reactions found over '''3''' reactions in the full pathway | + | * [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397] |
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6320]], phaselate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6320 PWY-6320] | ||
+ | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] | ||
+ | ** '''7''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398] | ||
+ | ** '''3''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7046]], 4-coumarate degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7897]], flavonoid di-C-glucosylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7897 PWY-7897] | ||
+ | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6982]], umbelliferone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6982 PWY-6982] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19642 19642] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616] |
− | * | + | * UNIPROT: |
− | ** [http://www. | + | ** [http://www.uniprot.org/uniprot/P31684 P31684] |
+ | ** [http://www.uniprot.org/uniprot/P31685 P31685] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7] | ||
+ | ** [http://www.uniprot.org/uniprot/P17814 P17814] | ||
+ | ** [http://www.uniprot.org/uniprot/P31687 P31687] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2] | ||
+ | ** [http://www.uniprot.org/uniprot/P14912 P14912] | ||
+ | ** [http://www.uniprot.org/uniprot/P14913 P14913] | ||
+ | ** [http://www.uniprot.org/uniprot/P31686 P31686] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42524 Q42524] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42943 Q42943] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42982 Q42982] | ||
+ | ** [http://www.uniprot.org/uniprot/P93360 P93360] | ||
+ | ** [http://www.uniprot.org/uniprot/P93361 P93361] | ||
+ | ** [http://www.uniprot.org/uniprot/O24146 O24146] | ||
+ | ** [http://www.uniprot.org/uniprot/O48868 O48868] | ||
+ | ** [http://www.uniprot.org/uniprot/O48869 O48869] | ||
+ | ** [http://www.uniprot.org/uniprot/O81139 O81139] | ||
+ | ** [http://www.uniprot.org/uniprot/O81140 O81140] | ||
+ | ** [http://www.uniprot.org/uniprot/P41636 P41636] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | + | {{#set: ec-number=ec-6.2.1.12}} | |
− | {{#set: ec-number=ec- | + | {{#set: nb gene associated=2}} |
− | {{#set: nb gene associated= | + | {{#set: nb pathway associated=12}} |
− | {{#set: nb pathway associated= | + | {{#set: reconstruction category=orthology}} |
− | {{#set: reconstruction category=orthology | + | {{#set: reconstruction tool=pantograph}} |
− | {{#set: reconstruction tool=pantograph | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} |
Revision as of 09:29, 27 August 2019
Contents
Reaction 4-COUMARATE--COA-LIGASE-RXN
- direction:
- left-to-right
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ03066
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ16901
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-7397, naringenin biosynthesis (engineered): PWY-7397
- 3 reactions found over 4 reactions in the full pathway
- PWY-6320, phaselate biosynthesis: PWY-6320
- 1 reactions found over 5 reactions in the full pathway
- PWY-6435, 4-hydroxybenzoate biosynthesis III (plants): PWY-6435
- 4 reactions found over 5 reactions in the full pathway
- PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
- 5 reactions found over 5 reactions in the full pathway
- PWY-361, phenylpropanoid biosynthesis: PWY-361
- 7 reactions found over 15 reactions in the full pathway
- PWY-5135, xanthohumol biosynthesis: PWY-5135
- 2 reactions found over 4 reactions in the full pathway
- PWY-7398, coumarins biosynthesis (engineered): PWY-7398
- 3 reactions found over 13 reactions in the full pathway
- PWY-7046, 4-coumarate degradation (anaerobic): PWY-7046
- 2 reactions found over 6 reactions in the full pathway
- PWY-7897, flavonoid di-C-glucosylation: PWY-7897
- 3 reactions found over 15 reactions in the full pathway
- PWY-5754, 4-hydroxybenzoate biosynthesis I (eukaryotes): PWY-5754
- 2 reactions found over 5 reactions in the full pathway
- PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
- 5 reactions found over 6 reactions in the full pathway
- PWY-6982, umbelliferone biosynthesis: PWY-6982
- 1 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links