Difference between revisions of "CPD1F-131"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ21726 == * transcription-direction: ** positive * right-end-position: ** 510474 * left-end-position: ** 502500 * centisome-position: ** 84.55667...") |
(Created page with "Category:gene == Gene SJ21294 == * transcription-direction: ** positive * right-end-position: ** 170545 * left-end-position: ** 137602 * centisome-position: ** 70.67531...") |
||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ21294 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 170545 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 137602 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 70.67531 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[D-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[DLACTDEHYDROGNAD-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[GLYCOLATEDEHYDRO-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RR-BUTANEDIOL-DEHYDROGENASE-RXN]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-969]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[RXN0-7229]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[S-2-HYDROXY-ACID-OXIDASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[UDPNACETYLMURAMATEDEHYDROG-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[MGLDLCTANA-PWY]] | ||
** '''2''' reactions found over '''4''' reactions in the full pathway | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[P122-PWY]] |
− | ** '''1''' reactions found over ''' | + | ** '''16''' reactions found over '''18''' reactions in the full pathway |
− | * [[ | + | * [[FERMENTATION-PWY]] |
− | ** ''' | + | ** '''11''' reactions found over '''16''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY4LZ-257]] |
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6454]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6901]] | ||
+ | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[ALACAT2-PWY]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6649]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[GLYOXDEG-PWY]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[GLYCOLATEMET-PWY]] | ||
** '''2''' reactions found over '''4''' reactions in the full pathway | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5951]] |
− | ** '''1''' reactions found over ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
+ | * [[PWY3O-246]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-181]] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6387]] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7953]] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6386]] | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY0-1261]] | ||
+ | ** '''3''' reactions found over '''12''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=170545}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=137602}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=70.67531 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=8}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=17}} |
Revision as of 14:24, 26 August 2019
Contents
Gene SJ21294
- transcription-direction:
- positive
- right-end-position:
- 170545
- left-end-position:
- 137602
- centisome-position:
- 70.67531
Organism(s) associated with this gene
Reaction(s) associated
- D-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- DLACTDEHYDROGNAD-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLYCOLATEDEHYDRO-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RR-BUTANEDIOL-DEHYDROGENASE-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-969
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN0-7229
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- S-2-HYDROXY-ACID-OXIDASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- UDPNACETYLMURAMATEDEHYDROG-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- MGLDLCTANA-PWY
- 2 reactions found over 4 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- PWY4LZ-257
- 7 reactions found over 7 reactions in the full pathway
- PWY-6454
- 1 reactions found over 3 reactions in the full pathway
- PWY-6901
- 10 reactions found over 8 reactions in the full pathway
- ALACAT2-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY-6649
- 1 reactions found over 3 reactions in the full pathway
- GLYOXDEG-PWY
- 2 reactions found over 2 reactions in the full pathway
- GLYCOLATEMET-PWY
- 2 reactions found over 4 reactions in the full pathway
- PWY-5951
- 1 reactions found over 1 reactions in the full pathway
- PWY3O-246
- 1 reactions found over 1 reactions in the full pathway
- PWY-181
- 5 reactions found over 9 reactions in the full pathway
- PWY-6387
- 2 reactions found over 8 reactions in the full pathway
- PWY-7953
- 2 reactions found over 8 reactions in the full pathway
- PWY-6386
- 2 reactions found over 8 reactions in the full pathway
- PWY0-1261
- 3 reactions found over 12 reactions in the full pathway