Difference between revisions of "CPD1F-135"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] == * direction: ** reversible * common-name: ** amidophospho...")
(Created page with "Category:metabolite == Metabolite CPD1F-135 == * common-name: ** trans-neoxanthin * smiles: ** cc(c=cc=c(c)[ch]=c=c1(c(o)(c)cc(o)cc(c)(c)1))=cc=cc=c(c)c=cc=c(c)c=cc23(c(c)...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] ==
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== Metabolite CPD1F-135 ==
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** amidophosphoribosyltransferase
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** trans-neoxanthin
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** amidophosphoribosyl transferase
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* smiles:
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* ec-number:
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** cc(c=cc=c(c)[ch]=c=c1(c(o)(c)cc(o)cc(c)(c)1))=cc=cc=c(c)c=cc=c(c)c=cc23(c(c)(c)cc(o)cc(c)(o2)3)
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** [http://enzyme.expasy.org/EC/2.4.2.14 ec-2.4.2.14]
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* inchi-key:
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== Reaction formula ==
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** pgyaysrvsajxte-clonmanbsa-n
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* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[GLN]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c]
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* molecular-weight:
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== Gene(s) associated with this reaction  ==
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** 600.88
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* Gene: [[SJ04979]]
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== Reaction(s) known to consume the compound ==
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** Category: [[annotation]]
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* [[RXN-8074]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) known to produce the compound ==
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** Category: [[orthology]]
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* [[RXN1F-155]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=trans-neoxanthin}}
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* Gene: [[SJ15928]]
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{{#set: inchi-key=inchikey=pgyaysrvsajxte-clonmanbsa-n}}
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** Category: [[annotation]]
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{{#set: molecular-weight=600.88}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ20754]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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== Pathway(s) ==
 
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 
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** '''6''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14908 14908]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P28173 P28173]
 
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** [http://www.uniprot.org/uniprot/P35433 P35433]
 
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** [http://www.uniprot.org/uniprot/Q06203 Q06203]
 
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** [http://www.uniprot.org/uniprot/O29388 O29388]
 
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** [http://www.uniprot.org/uniprot/O67236 O67236]
 
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** [http://www.uniprot.org/uniprot/P65829 P65829]
 
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** [http://www.uniprot.org/uniprot/O57979 O57979]
 
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** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
 
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** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
 
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** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
 
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** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
 
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** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
 
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** [http://www.uniprot.org/uniprot/Q57657 Q57657]
 
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** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
 
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** [http://www.uniprot.org/uniprot/O26742 O26742]
 
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** [http://www.uniprot.org/uniprot/P43854 P43854]
 
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** [http://www.uniprot.org/uniprot/P35853 P35853]
 
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** [http://www.uniprot.org/uniprot/P41390 P41390]
 
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** [http://www.uniprot.org/uniprot/Q27601 Q27601]
 
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** [http://www.uniprot.org/uniprot/Q38999 Q38999]
 
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** [http://www.uniprot.org/uniprot/P04046 P04046]
 
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** [http://www.uniprot.org/uniprot/Q55621 Q55621]
 
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** [http://www.uniprot.org/uniprot/Q55038 Q55038]
 
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** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
 
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** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
 
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** [http://www.uniprot.org/uniprot/P52418 P52418]
 
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** [http://www.uniprot.org/uniprot/P52419 P52419]
 
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** [http://www.uniprot.org/uniprot/Q22134 Q22134]
 
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** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
 
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** [http://www.uniprot.org/uniprot/P00497 P00497]
 
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** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 
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</div>
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=amidophosphoribosyl transferase|amidophosphoribosyltransferase}}
 
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{{#set: ec-number=ec-2.4.2.14}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=4}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite CPD1F-135

  • common-name:
    • trans-neoxanthin
  • smiles:
    • cc(c=cc=c(c)[ch]=c=c1(c(o)(c)cc(o)cc(c)(c)1))=cc=cc=c(c)c=cc=c(c)c=cc23(c(c)(c)cc(o)cc(c)(o2)3)
  • inchi-key:
    • pgyaysrvsajxte-clonmanbsa-n
  • molecular-weight:
    • 600.88

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD1F-135&oldid=138495"