Difference between revisions of "CPD1F-135"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9287 RXN-9287] == * direction: ** left-to-right * common-name: ** heptaprenyldihydroxybenzoate...")
 
(Created page with "Category:gene == Gene SJ05740 == * transcription-direction: ** negative * right-end-position: ** 98573 * left-end-position: ** 95200 * centisome-position: ** 19.451397...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9287 RXN-9287] ==
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== Gene SJ05740 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* common-name:
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* right-end-position:
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** heptaprenyldihydroxybenzoate methyltransferase
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** 98573
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/2.1.1.114 ec-2.1.1.114]
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** 95200
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* synonymous:
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* centisome-position:
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** 3-heptaprenyl-4,5-dihydroxybenzoate methyltransferase
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** 19.451397   
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[CPD-9903]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-9904]][c] '''+''' 1 [[PROTON]][c]
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* [[S.japonica_carotenoid_curated]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[SJ13007]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[3.2.1.21-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[3.2.1.58-RXN]]
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* [[PWY-5873]], ubiquinol-7 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5873 PWY-5873]
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** Category: [[annotation]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[3.2.1.75-RXN]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* RHEA:
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* [[RXN-10769]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44481 44481]
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** Category: [[annotation]]
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{{#set: direction=left-to-right}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: common-name=heptaprenyldihydroxybenzoate methyltransferase}}
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* [[RXN-10773]]
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{{#set: ec-number=ec-2.1.1.114}}
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** Category: [[annotation]]
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{{#set: synonymous=3-heptaprenyl-4,5-dihydroxybenzoate methyltransferase}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb gene associated=1}}
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* [[RXN-13602]]
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{{#set: nb pathway associated=1}}
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** Category: [[annotation]]
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{{#set: reconstruction category=annotation}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction tool=pathwaytools}}
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* [[RXN-13603]]
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{{#set: reconstruction comment=n.a}}
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** Category: [[annotation]]
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{{#set: reconstruction source=saccharina_japonica_genome}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14179]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-5341]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-8036]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9674]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-6788]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7091]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7092]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-3121]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5176]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6002]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=98573}}
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{{#set: left-end-position=95200}}
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{{#set: centisome-position=19.451397    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=11}}
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{{#set: nb pathway associated=6}}

Revision as of 14:24, 26 August 2019

Gene SJ05740

  • transcription-direction:
    • negative
  • right-end-position:
    • 98573
  • left-end-position:
    • 95200
  • centisome-position:
    • 19.451397

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6788
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7091
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7092
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-3121
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5176
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6002
    • 1 reactions found over 2 reactions in the full pathway




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