Difference between revisions of "CPD1F-135"

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(Created page with "Category:gene == Gene SJ05740 == * transcription-direction: ** negative * right-end-position: ** 98573 * left-end-position: ** 95200 * centisome-position: ** 19.451397...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] == * direction: ** reversible * common-name: ** amidophospho...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ05740 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] ==
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* transcription-direction:
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* direction:
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** negative
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** reversible
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* right-end-position:
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* common-name:
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** 98573
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** amidophosphoribosyltransferase
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* left-end-position:
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** amidophosphoribosyl transferase
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** 95200
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* ec-number:
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* centisome-position:
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** [http://enzyme.expasy.org/EC/2.4.2.14 ec-2.4.2.14]
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** 19.451397   
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[GLN]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c]
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* [[S.japonica_carotenoid_curated]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[SJ04979]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[3.2.1.21-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[3.2.1.58-RXN]]
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ15928]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[3.2.1.75-RXN]]
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* Gene: [[SJ20754]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-10769]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-10773]]
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== Pathway(s)  ==
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** Category: [[annotation]]
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''6''' reactions found over '''5''' reactions in the full pathway
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* [[RXN-13602]]
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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** Category: [[annotation]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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* [[RXN-13603]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-14179]]
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== Reconstruction information  ==
−
** Category: [[annotation]]
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-5341]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[RXN-8036]]
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* RHEA:
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** Category: [[annotation]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14908 14908]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* LIGAND-RXN:
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* [[RXN-9674]]
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** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
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** Category: [[annotation]]
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* UNIPROT:
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.uniprot.org/uniprot/P28173 P28173]
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** [http://www.uniprot.org/uniprot/P35433 P35433]
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** [http://www.uniprot.org/uniprot/Q06203 Q06203]
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** [http://www.uniprot.org/uniprot/O29388 O29388]
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** [http://www.uniprot.org/uniprot/O67236 O67236]
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** [http://www.uniprot.org/uniprot/P65829 P65829]
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** [http://www.uniprot.org/uniprot/O57979 O57979]
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** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
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** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
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** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
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** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
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** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
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** [http://www.uniprot.org/uniprot/Q57657 Q57657]
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** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
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** [http://www.uniprot.org/uniprot/O26742 O26742]
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** [http://www.uniprot.org/uniprot/P43854 P43854]
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** [http://www.uniprot.org/uniprot/P35853 P35853]
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** [http://www.uniprot.org/uniprot/P41390 P41390]
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** [http://www.uniprot.org/uniprot/Q27601 Q27601]
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** [http://www.uniprot.org/uniprot/Q38999 Q38999]
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** [http://www.uniprot.org/uniprot/P04046 P04046]
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** [http://www.uniprot.org/uniprot/Q55621 Q55621]
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** [http://www.uniprot.org/uniprot/Q55038 Q55038]
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** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
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** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
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** [http://www.uniprot.org/uniprot/P52418 P52418]
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** [http://www.uniprot.org/uniprot/P52419 P52419]
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** [http://www.uniprot.org/uniprot/Q22134 Q22134]
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** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
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** [http://www.uniprot.org/uniprot/P00497 P00497]
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** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 
</div>
 
</div>
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== Pathway(s) associated ==
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{{#set: direction=reversible}}
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* [[PWY-6788]]
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{{#set: common-name=amidophosphoribosyl transferase|amidophosphoribosyltransferase}}
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** '''3''' reactions found over '''3''' reactions in the full pathway
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{{#set: ec-number=ec-2.4.2.14}}
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* [[PWY-7091]]
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{{#set: nb gene associated=3}}
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** '''2''' reactions found over '''4''' reactions in the full pathway
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{{#set: nb pathway associated=4}}
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* [[PWY-7092]]
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{{#set: reconstruction category=annotation|orthology}}
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** '''2''' reactions found over '''3''' reactions in the full pathway
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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* [[PWY-3121]]
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{{#set: reconstruction comment=n.a}}
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** '''1''' reactions found over '''2''' reactions in the full pathway
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
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* [[PWY-5176]]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-6002]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=98573}}
 
−
{{#set: left-end-position=95200}}
 
−
{{#set: centisome-position=19.451397    }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=11}}
 
−
{{#set: nb pathway associated=6}}
 

Revision as of 09:28, 27 August 2019

Reaction PRPPAMIDOTRANS-RXN

  • direction:
    • reversible
  • common-name:
    • amidophosphoribosyltransferase
    • amidophosphoribosyl transferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 6 reactions found over 5 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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