Difference between revisions of "CPD1G-1354"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == * direction: ** reversible * common-name: ** udp-glucose 4-epim...")
(Created page with "Category:metabolite == Metabolite CPD1G-1354 == * common-name: ** trehalose-trans-keto-mono-mycolate * smiles: ** ccccccccccccccccccccccccccc(c(=o)occ2(c(o)c(o)c(o)c(oc1(c...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] ==
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== Metabolite CPD1G-1354 ==
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** udp-glucose 4-epimerase
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** trehalose-trans-keto-mono-mycolate
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2]
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** ccccccccccccccccccccccccccc(c(=o)occ2(c(o)c(o)c(o)c(oc1(c(o)c(o)c(o)c(co)o1))o2))c(o)ccccccccccccccccc3(cc3c(c)ccccccccccccccccc(=o)c(c)ccccccccccccccccc)
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== Reaction formula ==
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* inchi-key:
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* 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
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** zhikieytxxjmog-uqwwgajesa-n
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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* Gene: [[SJ16452]]
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** 1590.555
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** Category: [[annotation]]
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== Reaction(s) known to consume the compound ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) known to produce the compound ==
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** Category: [[orthology]]
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* [[RXN1G-1439]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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* Gene: [[SJ19552]]
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{{#set: common-name=trehalose-trans-keto-mono-mycolate}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=zhikieytxxjmog-uqwwgajesa-n}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: molecular-weight=1590.555}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ17935]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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== Pathway(s) ==
 
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* [[PWY-7344]], UDP-&alpha;-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344]
 
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** '''1''' reactions found over '''1''' reactions in the full pathway
 
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* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
 
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** '''6''' reactions found over '''1''' reactions in the full pathway
 
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* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
 
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** '''1''' reactions found over '''17''' reactions in the full pathway
 
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* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
 
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** '''5''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-3821]], D-galactose detoxification: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22171 22171]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P35673 P35673]
 
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** [http://www.uniprot.org/uniprot/P22715 P22715]
 
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** [http://www.uniprot.org/uniprot/P21977 P21977]
 
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** [http://www.uniprot.org/uniprot/P24325 P24325]
 
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** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
 
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** [http://www.uniprot.org/uniprot/Q57664 Q57664]
 
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** [http://www.uniprot.org/uniprot/P55180 P55180]
 
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** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
 
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** [http://www.uniprot.org/uniprot/P56997 P56997]
 
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** [http://www.uniprot.org/uniprot/Q59083 Q59083]
 
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** [http://www.uniprot.org/uniprot/Q44016 Q44016]
 
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** [http://www.uniprot.org/uniprot/Q45291 Q45291]
 
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** [http://www.uniprot.org/uniprot/P96995 P96995]
 
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** [http://www.uniprot.org/uniprot/P45602 P45602]
 
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** [http://www.uniprot.org/uniprot/P18645 P18645]
 
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** [http://www.uniprot.org/uniprot/P26503 P26503]
 
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** [http://www.uniprot.org/uniprot/P40801 P40801]
 
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** [http://www.uniprot.org/uniprot/Q05026 Q05026]
 
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** [http://www.uniprot.org/uniprot/P56985 P56985]
 
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** [http://www.uniprot.org/uniprot/Q51148 Q51148]
 
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** [http://www.uniprot.org/uniprot/Q56093 Q56093]
 
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** [http://www.uniprot.org/uniprot/Q42605 Q42605]
 
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** [http://www.uniprot.org/uniprot/Q60109 Q60109]
 
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** [http://www.uniprot.org/uniprot/P72903 P72903]
 
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** [http://www.uniprot.org/uniprot/P72915 P72915]
 
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** [http://www.uniprot.org/uniprot/O66256 O66256]
 
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** [http://www.uniprot.org/uniprot/O64749 O64749]
 
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** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
 
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** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
 
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** [http://www.uniprot.org/uniprot/Q43070 Q43070]
 
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** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
 
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** [http://www.uniprot.org/uniprot/O65780 O65780]
 
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** [http://www.uniprot.org/uniprot/O65781 O65781]
 
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** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 
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** [http://www.uniprot.org/uniprot/P04397 P04397]
 
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** [http://www.uniprot.org/uniprot/P09147 P09147]
 
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** [http://www.uniprot.org/uniprot/P13226 P13226]
 
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** [http://www.uniprot.org/uniprot/P09609 P09609]
 
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</div>
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=udp-glucose 4-epimerase}}
 
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{{#set: ec-number=ec-5.1.3.2}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=8}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite CPD1G-1354

  • common-name:
    • trehalose-trans-keto-mono-mycolate
  • smiles:
    • ccccccccccccccccccccccccccc(c(=o)occ2(c(o)c(o)c(o)c(oc1(c(o)c(o)c(o)c(co)o1))o2))c(o)ccccccccccccccccc3(cc3c(c)ccccccccccccccccc(=o)c(c)ccccccccccccccccc)
  • inchi-key:
    • zhikieytxxjmog-uqwwgajesa-n
  • molecular-weight:
    • 1590.555

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD1G-1354&oldid=138761"