Difference between revisions of "CTPSYN-RXN"

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(Created page with "Category:reaction == Reaction 2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN == * direction: ** left-to-right * common-name: ** 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase * e...")
(Created page with "Category:reaction == Reaction CTPSYN-RXN == * direction: ** left-to-right * common-name: ** ctp synthase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.2 ec-6.3.4.2] =...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN ==
+
== Reaction CTPSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase
+
** ctp synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.201 ec-2.1.1.201]
+
** [http://enzyme.expasy.org/EC/6.3.4.2 ec-6.3.4.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OCTAPRENYL-METHOXY-BENZOQUINONE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[OCTAPRENYL-METHYL-METHOXY-BENZQ]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[UTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CTP]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07094]]
−
* Gene: [[SJ11297]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02842]]
+
* Gene: [[SJ13618]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02693]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07072]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ20751]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ11757]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00609]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6708]], ubiquinol-8 biosynthesis (prokaryotic):
+
* [[PWY-7185]], UTP and CTP dephosphorylation I:
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5870]], ubiquinol-8 biosynthesis (eukaryotic):
+
* [[PWY-7176]], UTP and CTP de novo biosynthesis:
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7177]], UTP and CTP dephosphorylation II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR96945
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27775 27775]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26427 26427]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00573 R00573]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q58574 Q58574]
 +
** [http://www.uniprot.org/uniprot/P44341 P44341]
 +
** [http://www.uniprot.org/uniprot/Q9PJ84 Q9PJ84]
 +
** [http://www.uniprot.org/uniprot/Q9JTK1 Q9JTK1]
 +
** [http://www.uniprot.org/uniprot/P28595 P28595]
 +
** [http://www.uniprot.org/uniprot/P28274 P28274]
 +
** [http://www.uniprot.org/uniprot/P38627 P38627]
 +
** [http://www.uniprot.org/uniprot/P53529 P53529]
 +
** [http://www.uniprot.org/uniprot/P74208 P74208]
 +
** [http://www.uniprot.org/uniprot/P13242 P13242]
 +
** [http://www.uniprot.org/uniprot/P0A7E5 P0A7E5]
 +
** [http://www.uniprot.org/uniprot/P17812 P17812]
 +
** [http://www.uniprot.org/uniprot/O64753 O64753]
 +
** [http://www.uniprot.org/uniprot/O04252 O04252]
 +
** [http://www.uniprot.org/uniprot/O65445 O65445]
 +
** [http://www.uniprot.org/uniprot/O74638 O74638]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-octaprenyl-6-methoxy-1,4-benzoquinone methylase}}
+
{{#set: common-name=ctp synthase}}
−
{{#set: ec-number=ec-2.1.1.201}}
+
{{#set: ec-number=ec-6.3.4.2}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction CTPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • ctp synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7185, UTP and CTP dephosphorylation I:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7176, UTP and CTP de novo biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7177, UTP and CTP dephosphorylation II:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CTPSYN-RXN&oldid=140098"