Difference between revisions of "CTPSYN-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9648 RXN-9648] == * direction: ** left-to-right * common-name: ** fatty acid synthase * ec-numb...")
(Created page with "Category:reaction == Reaction 1.8.1.4-RXN == * direction: ** left-to-right * common-name: ** dihydrolipoamide dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9648 RXN-9648] ==
+
== Reaction 1.8.1.4-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fatty acid synthase
+
** dihydrolipoamide dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.8.1.4 ec-1.8.1.4]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
+
** e3 component of α-ketoacid dehydrogenase complexes
 +
** diaphorase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Butanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-hexanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
+
* 1 [[Dihydro-Lipoyl-Proteins]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ10661]]
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06617]]
+
* Gene: [[SJ06474]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00005]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15984]]
+
* Gene: [[SJ13629]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06944]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13014]]
+
* Gene: [[SJ03718]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01698 R01698]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P52992 P52992]
 +
** [http://www.uniprot.org/uniprot/O00087 O00087]
 +
** [http://www.uniprot.org/uniprot/O17953 O17953]
 +
** [http://www.uniprot.org/uniprot/O50311 O50311]
 +
** [http://www.uniprot.org/uniprot/Q41219 Q41219]
 +
** [http://www.uniprot.org/uniprot/O81413 O81413]
 +
** [http://www.uniprot.org/uniprot/P75393 P75393]
 +
** [http://www.uniprot.org/uniprot/Q9I1M1 Q9I1M1]
 +
** [http://www.uniprot.org/uniprot/Q7M0Q1 Q7M0Q1]
 +
** [http://www.uniprot.org/uniprot/Q9JZ09 Q9JZ09]
 +
** [http://www.uniprot.org/uniprot/Q04933 Q04933]
 +
** [http://www.uniprot.org/uniprot/P31023 P31023]
 +
** [http://www.uniprot.org/uniprot/P0A0E8 P0A0E8]
 +
** [http://www.uniprot.org/uniprot/P31046 P31046]
 +
** [http://www.uniprot.org/uniprot/P11959 P11959]
 +
** [http://www.uniprot.org/uniprot/Q48419 Q48419]
 +
** [http://www.uniprot.org/uniprot/P49819 P49819]
 +
** [http://www.uniprot.org/uniprot/P47513 P47513]
 +
** [http://www.uniprot.org/uniprot/Q59299 Q59299]
 +
** [http://www.uniprot.org/uniprot/P43784 P43784]
 +
** [http://www.uniprot.org/uniprot/Q9JU06 Q9JU06]
 +
** [http://www.uniprot.org/uniprot/Q60154 Q60154]
 +
** [http://www.uniprot.org/uniprot/Q9RRG6 Q9RRG6]
 +
** [http://www.uniprot.org/uniprot/P21880 P21880]
 +
** [http://www.uniprot.org/uniprot/P09063 P09063]
 +
** [http://www.uniprot.org/uniprot/P09623 P09623]
 +
** [http://www.uniprot.org/uniprot/P09622 P09622]
 +
** [http://www.uniprot.org/uniprot/P0A9P0 P0A9P0]
 +
** [http://www.uniprot.org/uniprot/P18925 P18925]
 +
** [http://www.uniprot.org/uniprot/Q9JZP5 Q9JZP5]
 +
** [http://www.uniprot.org/uniprot/Q58053 Q58053]
 +
** [http://www.uniprot.org/uniprot/Q59099 Q59099]
 +
** [http://www.uniprot.org/uniprot/P35484 P35484]
 +
** [http://www.uniprot.org/uniprot/Q7M0Y3 Q7M0Y3]
 +
** [http://www.uniprot.org/uniprot/Q9JUT1 Q9JUT1]
 +
** [http://www.uniprot.org/uniprot/Q9ZD83 Q9ZD83]
 +
** [http://www.uniprot.org/uniprot/Q7M0Y4 Q7M0Y4]
 +
** [http://www.uniprot.org/uniprot/Q9JUT5 Q9JUT5]
 +
** [http://www.uniprot.org/uniprot/Q04829 Q04829]
 +
** [http://www.uniprot.org/uniprot/P31052 P31052]
 +
** [http://www.uniprot.org/uniprot/Q7M0Y5 Q7M0Y5]
 +
** [http://www.uniprot.org/uniprot/P09624 P09624]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15045 15045]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fatty acid synthase}}
+
{{#set: common-name=dihydrolipoamide dehydrogenase}}
−
{{#set: ec-number=ec-2.3.1.86|ec-2.3.1.41|ec-2.3.1.85}}
+
{{#set: ec-number=ec-1.8.1.4}}
−
{{#set: nb gene associated=17}}
+
{{#set: synonymous=e3 component of &alpha;-ketoacid dehydrogenase complexes|diaphorase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:39, 18 December 2020

Reaction 1.8.1.4-RXN

  • direction:
    • left-to-right
  • common-name:
    • dihydrolipoamide dehydrogenase
  • ec-number:
  • synonymous:
    • e3 component of α-ketoacid dehydrogenase complexes
    • diaphorase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CTPSYN-RXN&oldid=48914"