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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction IMP-DEHYDROG-RXN == | + | == Reaction CYSPH-RXN == |
| | * direction: | | * direction: |
| − | ** reversible | + | ** left-to-right |
| − | * common-name:
| |
| − | ** imp dehydrogenase
| |
| | * ec-number: | | * ec-number: |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.205 ec-1.1.1.205] | + | ** [http://enzyme.expasy.org/EC/2.5.1 ec-2.5.1] |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[IMP]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] | + | * 1 [[CYS]][c] '''+''' 1 [[O-PHOSPHO-L-HOMOSERINE]][c] '''=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[Pi]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ21569]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ08176]]
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| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ22514]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-5695]], inosine 5'-phosphate degradation: | + | * [[PWY-702]], L-methionine biosynthesis II: |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| + | ** '''5''' reactions found over '''6''' reactions in the full pathway |
| − | * [[PWY-6596]], adenosine nucleotides degradation I:
| |
| − | ** '''7''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis:
| |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway | |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | + | * category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * METANETX-RXN : MNXR97021 |
| − | * RHEA:
| + | {{#set: direction=left-to-right}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11711 11711]
| + | {{#set: ec-number=ec-2.5.1}} |
| − | * LIGAND-RXN: | + | {{#set: nb gene associated=0}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01130 R01130]
| + | {{#set: nb pathway associated=1}} |
| − | * UNIPROT:
| + | {{#set: reconstruction category=gap-filling}} |
| − | ** [http://www.uniprot.org/uniprot/P12268 P12268]
| + | {{#set: reconstruction tool=meneco}} |
| − | ** [http://www.uniprot.org/uniprot/P21620 P21620]
| + | {{#set: reconstruction comment=added for gapfilling}} |
| − | ** [http://www.uniprot.org/uniprot/P50098 P50098]
| + | {{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}} |
| − | ** [http://www.uniprot.org/uniprot/P50097 P50097]
| |
| − | ** [http://www.uniprot.org/uniprot/O26245 O26245]
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| − | ** [http://www.uniprot.org/uniprot/Q9PAR5 Q9PAR5]
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| − | ** [http://www.uniprot.org/uniprot/P65172 P65172]
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| − | ** [http://www.uniprot.org/uniprot/Q9X168 Q9X168]
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| − | ** [http://www.uniprot.org/uniprot/Q9KTW3 Q9KTW3]
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| − | ** [http://www.uniprot.org/uniprot/Q9YBU2 Q9YBU2]
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| − | ** [http://www.uniprot.org/uniprot/Q9CIY6 Q9CIY6]
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| − | ** [http://www.uniprot.org/uniprot/P21879 P21879]
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| − | ** [http://www.uniprot.org/uniprot/P0ADG7 P0ADG7]
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| − | ** [http://www.uniprot.org/uniprot/P56088 P56088]
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| − | ** [http://www.uniprot.org/uniprot/P49058 P49058]
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| − | ** [http://www.uniprot.org/uniprot/O58045 O58045]
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| − | ** [http://www.uniprot.org/uniprot/Q9UY49 Q9UY49]
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| − | ** [http://www.uniprot.org/uniprot/Q9PKM2 Q9PKM2]
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| − | ** [http://www.uniprot.org/uniprot/Q9RT87 Q9RT87]
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| − | ** [http://www.uniprot.org/uniprot/Q9JUD0 Q9JUD0]
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| − | ** [http://www.uniprot.org/uniprot/Q59011 Q59011]
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| − | ** [http://www.uniprot.org/uniprot/Q9PNN3 Q9PNN3]
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| − | ** [http://www.uniprot.org/uniprot/P44334 P44334]
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| − | ** [http://www.uniprot.org/uniprot/O67820 O67820]
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| − | ** [http://www.uniprot.org/uniprot/P65167 P65167]
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| − | ** [http://www.uniprot.org/uniprot/Q9ZL14 Q9ZL14]
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| − | ** [http://www.uniprot.org/uniprot/Q9JZB5 Q9JZB5]
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| − | ** [http://www.uniprot.org/uniprot/Q9HXM5 Q9HXM5]
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| − | ** [http://www.uniprot.org/uniprot/P0C0H6 P0C0H6]
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| − | ** [http://www.uniprot.org/uniprot/P42851 P42851]
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| − | ** [http://www.uniprot.org/uniprot/P47996 P47996]
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| − | ** [http://www.uniprot.org/uniprot/Q9RHG9 Q9RHG9]
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| − | ** [http://www.uniprot.org/uniprot/P24547 P24547]
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| − | ** [http://www.uniprot.org/uniprot/Q9RHG1 Q9RHG1]
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| − | ** [http://www.uniprot.org/uniprot/P31002 P31002]
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| − | ** [http://www.uniprot.org/uniprot/Q07152 Q07152]
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| − | ** [http://www.uniprot.org/uniprot/P38697 P38697]
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| − | ** [http://www.uniprot.org/uniprot/P50094 P50094]
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| − | ** [http://www.uniprot.org/uniprot/P39567 P39567]
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| − | ** [http://www.uniprot.org/uniprot/P50095 P50095]
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| − | ** [http://www.uniprot.org/uniprot/Q49729 Q49729]
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| − | ** [http://www.uniprot.org/uniprot/O14344 O14344]
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| − | ** [http://www.uniprot.org/uniprot/O32912 O32912]
| |
| − | </div>
| |
| − | {{#set: direction=reversible}} | |
| − | {{#set: common-name=imp dehydrogenase}}
| |
| − | {{#set: ec-number=ec-1.1.1.205}} | |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=3}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | |
