Difference between revisions of "CYSTATHIONASE-RXN"

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(Created page with "Category:reaction == Reaction GCVP-RXN == * direction: ** reversible * common-name: ** glycine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4....")
(Created page with "Category:reaction == Reaction CYSTATHIONASE-RXN == * direction: ** reversible == Reaction formula == * 1 L-CYSTATHIONINE[c] '''+''' 1 WATER[c] '''<=>''' 1 CYS[...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GCVP-RXN ==
+
== Reaction CYSTATHIONASE-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** glycine decarboxylase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4.2]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CYS]][c] '''+''' 1 [[HOMO-SER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08557]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06358]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYCLEAV-PWY]], glycine cleavage:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II:
 
−
** '''2''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR115794
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24307 24307]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
 
−
* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P26969 P26969]
 
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** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
 
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** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
 
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** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
 
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** [http://www.uniprot.org/uniprot/P23378 P23378]
 
−
** [http://www.uniprot.org/uniprot/P33195 P33195]
 
−
** [http://www.uniprot.org/uniprot/O80988 O80988]
 
−
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
 
−
** [http://www.uniprot.org/uniprot/O32915 O32915]
 
−
** [http://www.uniprot.org/uniprot/O22575 O22575]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=glycine decarboxylase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-1.4.4.2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:19, 18 March 2021

Reaction CYSTATHIONASE-RXN

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR115794




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