Difference between revisions of "CYTOCHROME-B5-REDUCTASE-RXN"

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(Created page with "Category:reaction == Reaction 4.99.1.3-RXN == * direction: ** left-to-right * common-name: ** sirohydrochlorin cobaltochelatase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction RXN-15125 == * direction: ** left-to-right * common-name: ** l-serine ammonia-lyase == Reaction formula == * 1 SER[c] '''=>''' 1 2-AMIN...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 4.99.1.3-RXN ==
+
== Reaction RXN-15125 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** sirohydrochlorin cobaltochelatase
+
** l-serine ammonia-lyase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.99.1.3 ec-4.99.1.3]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO+2]][c] '''+''' 1 [[SIROHYDROCHLORIN]][c] '''=>''' 1 [[COBALT-SIROHYDROCHLORIN]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[SER]][c] '''=>''' 1 [[2-AMINOACRYLATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19170]]
+
* Gene: [[SJ08066]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15468]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
+
* [[SERDEG-PWY]], L-serine degradation:
−
** '''4''' reactions found over '''15''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3661]], glycine betaine degradation I:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00590 R00590]
 +
* METANETX-RXN : MNXR104344
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15893 15893]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=40664 40664]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05807 R05807]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=sirohydrochlorin cobaltochelatase}}
+
{{#set: common-name=l-serine ammonia-lyase}}
−
{{#set: ec-number=ec-4.99.1.3}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:32, 15 March 2021

Reaction RXN-15125

  • direction:
    • left-to-right
  • common-name:
    • l-serine ammonia-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SERDEG-PWY, L-serine degradation:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR104344
  • RHEA:





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