Difference between revisions of "Category:Gene"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15582 RXN-15582] == * direction: ** left-to-right == Reaction formula == * 1 S-Substituted-L-...")
(Created page with "Category:reaction == Reaction RXN-1404 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.5.5.1 ec-3.5.5.1] == Reaction formula == * 1 INDOL...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15582 RXN-15582] ==
+
== Reaction RXN-1404 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.5.5.1 ec-3.5.5.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[S-Substituted-L-Cysteines]][c] '''=>''' 1 [[2-AMINOACRYLATE]][c] '''+''' 1 [[Thiols]][c]
+
* 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03867]]
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* Gene: [[SJ14362]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02846]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi):
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-581]], indole-3-acetate biosynthesis II:
 +
** '''5''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWYQT-4476]], indole glucosinolate activation (herbivore attack):
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43025 43025]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=45777 45777]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-3.5.5.1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:38, 18 December 2020

Reaction RXN-1404

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5026, indole-3-acetate biosynthesis V (bacteria and fungi):
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-581, indole-3-acetate biosynthesis II:
    • 5 reactions found over 12 reactions in the full pathway
  • PWYQT-4476, indole glucosinolate activation (herbivore attack):
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Pages in category "Gene"

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