Difference between revisions of "Category:Pathway"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-93 RXN1F-93] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "{{#ask: Category:pathway | ?common-name | ?nb reaction found | ?nb total reaction | ?completion rate |sort=completion rate, nb total reaction |order=descending }}")
 
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[[Category:reaction]]
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{{#ask: [[Category:pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-93 RXN1F-93] ==
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| ?common-name
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* direction:
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| ?nb reaction found
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** left-to-right
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| ?nb total reaction
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* ec-number:
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| ?completion rate
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** [http://enzyme.expasy.org/EC/1.14.11.23 ec-1.14.11.23]
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|sort=completion rate, nb total reaction
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== Reaction formula ==
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|order=descending
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD1F-90]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[WATER]][c]
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}}
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== Gene(s) associated with this reaction ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[SJ07557]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ14670]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ14672]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ14677]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ14675]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ08018]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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</div>
 
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== Pathway(s)  ==
 
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
 
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** '''6''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-3101]], flavonol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3101 PWY-3101]
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03126 R03126]
 
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{{#set: direction=left-to-right}}
 
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{{#set: ec-number=ec-1.14.11.23}}
 
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:18, 18 March 2021

 Common-nameNb reaction foundNb total reactionCompletion rate
PWY-6196D-serine metabolism1N.aN.a
PWY0-661Prpp biosynthesis ii1N.aN.a
PWY-6305Putrescine biosynthesis iv4N.aN.a
PWY0-1534Hydrogen sulfide biosynthesis i1N.aN.a
P224-PWYSulfate reduction v (dissimilatory, to thiosulfate)2N.aN.a
PWY-82382N.aN.a
PWY-5965Fatty acid biosynthesis initiation iii1N.aN.a
PWY0-1415Superpathway of heme b biosynthesis from uroporphyrinogen-iii4N.aN.a
PWY-5966Fatty acid biosynthesis initiation ii2N.aN.a
PWY-3221Dtdp-l-rhamnose biosynthesis ii1N.aN.a
PWY66-422D-galactose degradation v (leloir pathway)5N.aN.a
PWY-5664Erythro-tetrahydrobiopterin biosynthesis ii2N.aN.a
PWY-7233Ubiquinol-6 bypass biosynthesis (eukaryotic)3N.aN.a
PWY-7243Pectin degradation i1N.aN.a
PWY-7235Superpathway of ubiquinol-6 biosynthesis (eukaryotic)2N.aN.a
PWY-6115Avenacin biosynthesis, initial reactions1N.aN.a
PWY66-4Cholesterol biosynthesis iii (via desmosterol)1243.0
PWY-4981L-proline biosynthesis ii (from arginine)321.5
PWY-5750Itaconate biosynthesis321.5
PWY-7432L-phenylalanine biosynthesis iii (cytosolic, plants)321.5
PWY-3341L-proline biosynthesis iii431.33
PWY-7219Adenosine ribonucleotides de novo biosynthesis431.33
PWY-7118Chitin degradation to ethanol541.25
PWY-5913Partial tca cycle (obligate autotrophs)1081.25
PWY-882L-ascorbate biosynthesis i (l-galactose pathway)651.2
PWY-6163Chorismate biosynthesis from 3-dehydroquinate651.2
PWY-6823Molybdenum cofactor biosynthesis761.17
PWY-6969Tca cycle v (2-oxoglutarate:ferredoxin oxidoreductase)1091.11
P105-PWYTca cycle iv (2-oxoglutarate decarboxylase)1091.11
PWY-4341L-glutamate biosynthesis v111.0
PWY-7346Udp-α-d-glucuronate biosynthesis (from udp-glucose)111.0
GLYSYN-THR-PWYGlycine biosynthesis iv111.0
PWY-5490Paraoxon degradation111.0
PWY-6173Histamine biosynthesis111.0
PWY-7344Udp-α-d-galactose biosynthesis111.0
PHENYLALANINE-DEG1-PWYL-phenylalanine degradation i (aerobic)111.0
PWY3O-246(r,r)-butanediol degradation111.0
PWY-6012-1Acyl carrier protein activation111.0
PWY-6745Phytochelatins biosynthesis111.0
ASPARAGINE-BIOSYNTHESISL-asparagine biosynthesis i111.0
COA-PWY-1Superpathway of coenzyme a biosynthesis iii (mammals)111.0
PWY-7806Glyphosate degradation ii111.0
PWY-4861Udp-α-d-galacturonate biosynthesis i (from udp-d-glucuronate)111.0
PWY-5120Geranylgeranyl diphosphate biosynthesis111.0
PWY-6013Crepenynate biosynthesis111.0
PWY-4921Protein citrullination111.0
PWY-7625Phosphatidylinositol biosynthesis ii (eukaryotes)111.0
PWY6666-1Anandamide degradation111.0
P142-PWYPyruvate fermentation to acetate i111.0
GLUTAMATE-DEG1-PWYL-glutamate degradation i111.0
... further results

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