Difference between revisions of "Category:Pathway"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5055 RXN0-5055] == * direction: ** left-to-right * common-name: ** acetyl-coa carboxyltransfer...")
(Created page with "Category:metabolite == Metabolite 2-TRANS6-TRANS-FARNESAL == * common-name: ** (2e,6e)-farnesal * smiles: ** cc(c)=cccc(c)=cccc(c)=c[ch]=o * inchi-key: ** yhruhbbtqzkmex-y...")
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5055 RXN0-5055] ==
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== Metabolite 2-TRANS6-TRANS-FARNESAL ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** acetyl-coa carboxyltransferase
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** (2e,6e)-farnesal
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/2.1.3.d ec-2.1.3.d]
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** cc(c)=cccc(c)=cccc(c)=c[ch]=o
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== Reaction formula ==
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* inchi-key:
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* 1 [[ACETYL-COA]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[MALONYL-COA]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c]
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** yhruhbbtqzkmex-yfvjmotdsa-n
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 220.354
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* Gene: [[SJ14528]]
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== Reaction(s) known to consume the compound ==
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** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-11623]]
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** Category: [[orthology]]
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== Reaction(s) of unknown directionality ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=(2e,6e)-farnesal}}
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* Gene: [[SJ17987]]
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{{#set: inchi-key=inchikey=yhruhbbtqzkmex-yfvjmotdsa-n}}
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** Category: [[annotation]]
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{{#set: molecular-weight=220.354}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ14529]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ06726]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ00484]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[PWY-5744]], glyoxylate assimilation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5744 PWY-5744]
 
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** '''4''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-5743]], 3-hydroxypropanoate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5743 PWY-5743]
 
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** '''5''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 
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** '''8''' reactions found over '''18''' reactions in the full pathway
 
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* [[PWY0-1264]], biotin-carboxyl carrier protein assembly: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1264 PWY0-1264]
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6722]], candicidin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6722 PWY-6722]
 
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** '''1''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=acetyl-coa carboxyltransferase}}
 
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{{#set: ec-number=ec-2.1.3.d}}
 
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{{#set: nb gene associated=5}}
 
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{{#set: nb pathway associated=6}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 20:38, 18 December 2020

Metabolite 2-TRANS6-TRANS-FARNESAL

  • common-name:
    • (2e,6e)-farnesal
  • smiles:
    • cc(c)=cccc(c)=cccc(c)=c[ch]=o
  • inchi-key:
    • yhruhbbtqzkmex-yfvjmotdsa-n
  • molecular-weight:
    • 220.354

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Pages in category "Pathway"

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