Difference between revisions of "Charged-VAL-tRNAs"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] == * direction: ** left-to-right * common-name: ** fructose-1,6-bisp...")
 
(Created page with "Category:metabolite == Metabolite Charged-VAL-tRNAs == * common-name: ** an l-valyl-[trnaval] == Reaction(s) known to consume the compound == == Reaction(s) known to produ...")
 
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] ==
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== Metabolite Charged-VAL-tRNAs ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** fructose-1,6-bisphosphatase
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** an l-valyl-[trnaval]
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** fructose 1,6-bisphosphate 1-phosphatase
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== Reaction(s) known to consume the compound ==
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* ec-number:
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== Reaction(s) known to produce the compound ==
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** [http://enzyme.expasy.org/EC/3.1.3.11 ec-3.1.3.11]
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* [[VALINE--TRNA-LIGASE-RXN]]
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== Reaction formula ==
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== Reaction(s) of unknown directionality ==
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* 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c]
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{{#set: common-name=an l-valyl-[trnaval]}}
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== Gene(s) associated with this reaction  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[SJ14175]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ16950]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ17320]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ13518]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ14821]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ10463]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ20807]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 
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** '''12''' reactions found over '''13''' reactions in the full pathway
 
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
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** '''12''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11065 11065]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P09199 P09199]
 
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** [http://www.uniprot.org/uniprot/P19112 P19112]
 
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** [http://www.uniprot.org/uniprot/P22780 P22780]
 
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** [http://www.uniprot.org/uniprot/P09467 P09467]
 
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** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
 
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** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
 
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** [http://www.uniprot.org/uniprot/P09202 P09202]
 
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** [http://www.uniprot.org/uniprot/Q45597 Q45597]
 
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** [http://www.uniprot.org/uniprot/P45292 P45292]
 
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** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
 
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** [http://www.uniprot.org/uniprot/P19912 P19912]
 
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** [http://www.uniprot.org/uniprot/P19911 P19911]
 
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** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
 
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** [http://www.uniprot.org/uniprot/P09201 P09201]
 
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** [http://www.uniprot.org/uniprot/P0A993 P0A993]
 
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** [http://www.uniprot.org/uniprot/P00636 P00636]
 
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** [http://www.uniprot.org/uniprot/P23014 P23014]
 
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** [http://www.uniprot.org/uniprot/P27994 P27994]
 
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** [http://www.uniprot.org/uniprot/P14766 P14766]
 
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** [http://www.uniprot.org/uniprot/P09195 P09195]
 
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** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
 
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** [http://www.uniprot.org/uniprot/P25851 P25851]
 
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** [http://www.uniprot.org/uniprot/Q05079 Q05079]
 
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** [http://www.uniprot.org/uniprot/P46275 P46275]
 
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** [http://www.uniprot.org/uniprot/P46276 P46276]
 
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** [http://www.uniprot.org/uniprot/Q43139 Q43139]
 
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** [http://www.uniprot.org/uniprot/P00637 P00637]
 
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** [http://www.uniprot.org/uniprot/O65827 O65827]
 
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** [http://www.uniprot.org/uniprot/Q42796 Q42796]
 
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** [http://www.uniprot.org/uniprot/P46267 P46267]
 
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** [http://www.uniprot.org/uniprot/Q07204 Q07204]
 
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** [http://www.uniprot.org/uniprot/P22418 P22418]
 
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</div>
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=fructose-1,6-bisphosphatase|fructose 1,6-bisphosphate 1-phosphatase}}
 
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{{#set: ec-number=ec-3.1.3.11}}
 
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{{#set: nb gene associated=7}}
 
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{{#set: nb pathway associated=7}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite Charged-VAL-tRNAs

  • common-name:
    • an l-valyl-[trnaval]

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Property "Common-name" (as page type) with input value "an l-valyl-[trnaval" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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