Difference between revisions of "D-Hexoses"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTIDEAM2-RXN CYTIDEAM2-RXN] == * direction: ** left-to-right * common-name: ** cytidine deaminase...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] == * direction: ** reversible * common-name: ** gdp-d-mannose 3'',5''-epimerase...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTIDEAM2-RXN CYTIDEAM2-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** cytidine deaminase
+
** gdp-d-mannose 3'',5''-epimerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.5 ec-3.5.4.5]
+
** [http://enzyme.expasy.org/EC/5.1.3.18 ec-5.1.3.18]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CYTIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[URIDINE]][c]
+
* 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17454]]
+
* Gene: [[SJ02713]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1295]], pyrimidine ribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1295 PWY0-1295]
+
* [[PWY-5115]], GDP-L-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5115 PWY-5115]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7193]], pyrimidine ribonucleosides salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7193 PWY-7193]
+
* [[PWY4FS-13]], extended VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-13 PWY4FS-13]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6556]], pyrimidine ribonucleosides salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6556 PWY-6556]
+
* [[PWY4FS-12]], VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-12 PWY4FS-12]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16069 16069]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11147 11147]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01878 R01878]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P47718 P47718]
+
{{#set: common-name=gdp-d-mannose 3'',5''-epimerase}}
−
** [http://www.uniprot.org/uniprot/P0ABF6 P0ABF6]
+
{{#set: ec-number=ec-5.1.3.18}}
−
** [http://www.uniprot.org/uniprot/P47298 P47298]
 
−
** [http://www.uniprot.org/uniprot/Q9CFM8 Q9CFM8]
 
−
** [http://www.uniprot.org/uniprot/P32320 P32320]
 
−
** [http://www.uniprot.org/uniprot/P75051 P75051]
 
−
** [http://www.uniprot.org/uniprot/Q9SU87 Q9SU87]
 
−
** [http://www.uniprot.org/uniprot/Q9SU86 Q9SU86]
 
−
** [http://www.uniprot.org/uniprot/O65571 O65571]
 
−
** [http://www.uniprot.org/uniprot/Q9S847 Q9S847]
 
−
** [http://www.uniprot.org/uniprot/Q9S7L8 Q9S7L8]
 
−
** [http://www.uniprot.org/uniprot/Q9S7S2 Q9S7S2]
 
−
** [http://www.uniprot.org/uniprot/O65896 O65896]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=cytidine deaminase}}
 
−
{{#set: ec-number=ec-3.5.4.5}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:29, 27 August 2019

Reaction RXN-1882

  • direction:
    • reversible
  • common-name:
    • gdp-d-mannose 3,5-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5115, GDP-L-galactose biosynthesis: PWY-5115
    • 1 reactions found over 2 reactions in the full pathway
  • PWY4FS-13, extended VTC2 cycle: PWY4FS-13
    • 2 reactions found over 3 reactions in the full pathway
  • PWY4FS-12, VTC2 cycle: PWY4FS-12
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-882, L-ascorbate biosynthesis I (L-galactose pathway): PWY-882
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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