Difference between revisions of "D-OCTOPINE-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN == * direction: ** reversible * common-name: ** ornithine aminotransferase * ec-number: ** [http://e...")
(Created page with "Category:reaction == Reaction D-OCTOPINE-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** d-octopine dehydrogenase * ec-number: ** [http://enzyme.expas...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN ==
+
== Reaction D-OCTOPINE-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** ornithine aminotransferase
+
** d-octopine dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.13 ec-2.6.1.13]
+
** [http://enzyme.expasy.org/EC/1.5 ec-1.5]
 +
* synonymous:
 +
** d-octopine synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-Oxo-carboxylates]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[Amino-Acids-20]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
+
* 1 [[Acceptor]][c] '''+''' 1 [[CPD-309]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ARG]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09475]]
+
* Gene: [[SJ15888]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[OCTOPINEDEG-PWY]], octopine degradation:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR115810
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13880 13880]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01343 R01343]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P31893 P31893]
+
** [http://www.uniprot.org/uniprot/P0A395 P0A395]
−
** [http://www.uniprot.org/uniprot/P38021 P38021]
+
** [http://www.uniprot.org/uniprot/P0A394 P0A394]
−
** [http://www.uniprot.org/uniprot/Q9P7L5 Q9P7L5]
+
** [http://www.uniprot.org/uniprot/Q44297 Q44297]
−
** [http://www.uniprot.org/uniprot/P07991 P07991]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P04181 P04181]
+
{{#set: common-name=d-octopine dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P29758 P29758]
+
{{#set: ec-number=ec-1.5}}
−
** [http://www.uniprot.org/uniprot/P04182 P04182]
+
{{#set: synonymous=d-octopine synthase}}
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=ornithine aminotransferase}}
 
−
{{#set: ec-number=ec-2.6.1.13}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction D-OCTOPINE-DEHYDROGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • d-octopine dehydrogenase
  • ec-number:
  • synonymous:
    • d-octopine synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • OCTOPINEDEG-PWY, octopine degradation:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links






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