Difference between revisions of "D-PPENTOMUT-RXN"

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(Created page with "Category:reaction == Reaction URA-PHOSPH-RXN == * direction: ** reversible * common-name: ** uracil phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.3 ec-2...")
(Created page with "Category:reaction == Reaction RXN-11737 == * direction: ** reversible * common-name: ** cysteate aminotransferase ** l-phenylalanine:2-oxoglutarate aminotransferase * ec-n...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction URA-PHOSPH-RXN ==
+
== Reaction RXN-11737 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** uracil phosphorylase
+
** cysteate aminotransferase
 +
** l-phenylalanine:2-oxoglutarate aminotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.3 ec-2.4.2.3]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 ec-2.6.1.1]
−
** [http://enzyme.expasy.org/EC/2.4.2.2 ec-2.4.2.2]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEOXYURIDINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[DEOXY-D-RIBOSE-1-PHOSPHATE]][c] '''+''' 1 [[URACIL]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-CYSTEATE]][c] '''<=>''' 1 [[CPD-380]][c] '''+''' 1 [[GLT]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03195]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ08678]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07646]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20943]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04188]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05778]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation:
+
* [[PWY-6638]], sulfolactate degradation III:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6642]], (R)-cysteate degradation:
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6643]], coenzyme M biosynthesis II:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22827 22827]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02484 R02484]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02433 R02433]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=uracil phosphorylase}}
+
{{#set: common-name=cysteate aminotransferase|l-phenylalanine:2-oxoglutarate aminotransferase}}
−
{{#set: ec-number=ec-2.4.2.3|ec-2.4.2.2}}
+
{{#set: ec-number=ec-2.6.1.1}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:06, 5 January 2021

Reaction RXN-11737

  • direction:
    • reversible
  • common-name:
    • cysteate aminotransferase
    • l-phenylalanine:2-oxoglutarate aminotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6638, sulfolactate degradation III:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6642, (R)-cysteate degradation:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6643, coenzyme M biosynthesis II:
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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