Difference between revisions of "D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN"

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(Created page with "Category:reaction == Reaction RXN-16389 == * direction: ** left-to-right * common-name: ** 16-hydroxypalmitoyl-coa synthetase ** long-chain fatty acid-coa ligase * ec-numb...")
(Created page with "Category:reaction == Reaction D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN == * direction: ** reversible * common-name: ** d-xylose dehydrogenase * ec-number: ** [http://enzyme.expa...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16389 ==
+
== Reaction D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 16-hydroxypalmitoyl-coa synthetase
+
** d-xylose dehydrogenase
−
** long-chain fatty acid-coa ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.1.1.179 ec-1.1.1.179]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[16-HYDROXYPALMITATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-17621]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[D-Xylopyranose]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[CPD-360]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ14637]]
−
* Gene: [[SJ08690]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13972]]
+
* Gene: [[SJ12259]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08692]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08691]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03650]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-321]], cutin biosynthesis:
+
* [[PWY-6760]], D-xylose degradation III:
−
** '''3''' reactions found over '''16''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-1121]], suberin monomers biosynthesis:
 
−
** '''9''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-6733]], sporopollenin precursors biosynthesis:
 
−
** '''8''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR105257
−
{{#set: common-name=long-chain fatty acid-coa ligase|16-hydroxypalmitoyl-coa synthetase}}
+
* RHEA:
−
{{#set: ec-number=ec-6.2.1.3}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22000 22000]
−
{{#set: nb gene associated=6}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=3}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01430 R01430]
−
{{#set: reconstruction category=annotation|orthology}}
+
* UNIPROT:
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P49378 P49378]
 +
** [http://www.uniprot.org/uniprot/P31867 P31867]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=d-xylose dehydrogenase}}
 +
{{#set: ec-number=ec-1.1.1.179}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN

  • direction:
    • reversible
  • common-name:
    • d-xylose dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6760, D-xylose degradation III:
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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