Difference between revisions of "D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYLYLSULFATE-REDUCTASE-RXN ADENYLYLSULFATE-REDUCTASE-RXN] == * direction: ** reversible * ec-num...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] == * direction: ** reversible *...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYLYLSULFATE-REDUCTASE-RXN ADENYLYLSULFATE-REDUCTASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* common-name:
 +
** 3-dehydroquinate dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.8.99.2 ec-1.8.99.2]
+
** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMP]][c] '''+''' 1 [[Acceptor]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SO3]][c] '''<=>''' 1 [[APS]][c] '''+''' 1 [[Donor-H2]][c]
+
* 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ01054]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08386]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10493]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13450]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[DISSULFRED-PWY]], dissimilatory sulfate reduction I (to hydrogen sufide)): [http://metacyc.org/META/NEW-IMAGE?object=DISSULFRED-PWY DISSULFRED-PWY]
+
* [[PWY-6707]], gallate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6707 PWY-6707]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[P224-PWY]], dissimilatory sulfate reduction II (to thiosulfate): [http://metacyc.org/META/NEW-IMAGE?object=P224-PWY P224-PWY]
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5278]], sulfite oxidation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5278 PWY-5278]
+
* [[QUINATEDEG-PWY]], quinate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=QUINATEDEG-PWY QUINATEDEG-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5279]], sulfite oxidation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5279 PWY-5279]
+
* [[PWY-6416]], quinate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6416 PWY-6416]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24243 24243]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00860 R00860]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O28604 O28604]
+
** [http://www.uniprot.org/uniprot/P05195 P05195]
−
** [http://www.uniprot.org/uniprot/O28603 O28603]
+
** [http://www.uniprot.org/uniprot/P46380 P46380]
 +
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
 +
** [http://www.uniprot.org/uniprot/P07547 P07547]
 +
** [http://www.uniprot.org/uniprot/P08566 P08566]
 +
** [http://www.uniprot.org/uniprot/P43878 P43878]
 +
** [http://www.uniprot.org/uniprot/P05194 P05194]
 +
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
 +
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
 +
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
 +
** [http://www.uniprot.org/uniprot/P05147 P05147]
 +
** [http://www.uniprot.org/uniprot/P24670 P24670]
 +
** [http://www.uniprot.org/uniprot/P35146 P35146]
 +
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 +
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
 +
** [http://www.uniprot.org/uniprot/P73367 P73367]
 +
** [http://www.uniprot.org/uniprot/O65917 O65917]
 +
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-1.8.99.2}}
+
{{#set: common-name=3-dehydroquinate dehydratase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-4.2.1.10}}
 +
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}

Revision as of 09:31, 27 August 2019

Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN

  • direction:
    • reversible
  • common-name:
    • 3-dehydroquinate dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6707, gallate biosynthesis: PWY-6707
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
    • 6 reactions found over 5 reactions in the full pathway
  • QUINATEDEG-PWY, quinate degradation I: QUINATEDEG-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6416, quinate degradation II: PWY-6416
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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