Difference between revisions of "DADPKIN-RXN"

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(Created page with "Category:reaction == Reaction 1.8.1.4-RXN == * direction: ** left-to-right * common-name: ** dihydrolipoamide dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:reaction == Reaction DADPKIN-RXN == * direction: ** left-to-right * common-name: ** nucleoside diphosphate kinase ** dadp kinase * ec-number: ** [http://enzyme.ex...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.8.1.4-RXN ==
+
== Reaction DADPKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dihydrolipoamide dehydrogenase
+
** nucleoside diphosphate kinase
 +
** dadp kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.8.1.4 ec-1.8.1.4]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
−
* synonymous:
 
−
** diaphorase
 
−
** e3 component of α-ketoacid dehydrogenase complexes
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Dihydro-Lipoyl-Proteins]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DADP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DATP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10661]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ10125]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20794]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08159]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16893]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06474]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07124]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13629]]
+
* Gene: [[SJ21705]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03718]]
+
* Gene: [[SJ21816]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21967]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20076]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7224]], purine deoxyribonucleosides salvage:
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR101940
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27675 27675]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01698 R01698]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01137 R01137]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P52992 P52992]
 
−
** [http://www.uniprot.org/uniprot/O00087 O00087]
 
−
** [http://www.uniprot.org/uniprot/O17953 O17953]
 
−
** [http://www.uniprot.org/uniprot/O50311 O50311]
 
−
** [http://www.uniprot.org/uniprot/Q41219 Q41219]
 
−
** [http://www.uniprot.org/uniprot/O81413 O81413]
 
−
** [http://www.uniprot.org/uniprot/P75393 P75393]
 
−
** [http://www.uniprot.org/uniprot/Q9I1M1 Q9I1M1]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Q1 Q7M0Q1]
 
−
** [http://www.uniprot.org/uniprot/Q9JZ09 Q9JZ09]
 
−
** [http://www.uniprot.org/uniprot/Q04933 Q04933]
 
−
** [http://www.uniprot.org/uniprot/P31023 P31023]
 
−
** [http://www.uniprot.org/uniprot/P0A0E8 P0A0E8]
 
−
** [http://www.uniprot.org/uniprot/P31046 P31046]
 
−
** [http://www.uniprot.org/uniprot/P11959 P11959]
 
−
** [http://www.uniprot.org/uniprot/Q48419 Q48419]
 
−
** [http://www.uniprot.org/uniprot/P49819 P49819]
 
−
** [http://www.uniprot.org/uniprot/P47513 P47513]
 
−
** [http://www.uniprot.org/uniprot/Q59299 Q59299]
 
−
** [http://www.uniprot.org/uniprot/P43784 P43784]
 
−
** [http://www.uniprot.org/uniprot/Q9JU06 Q9JU06]
 
−
** [http://www.uniprot.org/uniprot/Q60154 Q60154]
 
−
** [http://www.uniprot.org/uniprot/Q9RRG6 Q9RRG6]
 
−
** [http://www.uniprot.org/uniprot/P21880 P21880]
 
−
** [http://www.uniprot.org/uniprot/P09063 P09063]
 
−
** [http://www.uniprot.org/uniprot/P09623 P09623]
 
−
** [http://www.uniprot.org/uniprot/P09622 P09622]
 
−
** [http://www.uniprot.org/uniprot/P0A9P0 P0A9P0]
 
−
** [http://www.uniprot.org/uniprot/P18925 P18925]
 
−
** [http://www.uniprot.org/uniprot/Q9JZP5 Q9JZP5]
 
−
** [http://www.uniprot.org/uniprot/Q58053 Q58053]
 
−
** [http://www.uniprot.org/uniprot/Q59099 Q59099]
 
−
** [http://www.uniprot.org/uniprot/P35484 P35484]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Y3 Q7M0Y3]
 
−
** [http://www.uniprot.org/uniprot/Q9JUT1 Q9JUT1]
 
−
** [http://www.uniprot.org/uniprot/Q9ZD83 Q9ZD83]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Y4 Q7M0Y4]
 
−
** [http://www.uniprot.org/uniprot/Q9JUT5 Q9JUT5]
 
−
** [http://www.uniprot.org/uniprot/Q04829 Q04829]
 
−
** [http://www.uniprot.org/uniprot/P31052 P31052]
 
−
** [http://www.uniprot.org/uniprot/Q7M0Y5 Q7M0Y5]
 
−
** [http://www.uniprot.org/uniprot/P09624 P09624]
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15045 15045]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dihydrolipoamide dehydrogenase}}
+
{{#set: common-name=dadp kinase|nucleoside diphosphate kinase}}
−
{{#set: ec-number=ec-1.8.1.4}}
+
{{#set: ec-number=ec-2.7.4.6}}
−
{{#set: synonymous=diaphorase|e3 component of &alpha;-ketoacid dehydrogenase complexes}}
+
{{#set: nb gene associated=9}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
 
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction DADPKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • nucleoside diphosphate kinase
    • dadp kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7220, adenosine deoxyribonucleotides de novo biosynthesis II:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7227, adenosine deoxyribonucleotides de novo biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7224, purine deoxyribonucleosides salvage:
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR101940
  • RHEA:
  • LIGAND-RXN:





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