Difference between revisions of "DAHPSYN-RXN"

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(Created page with "Category:reaction == Reaction SAMDECARB-RXN == * direction: ** left-to-right * common-name: ** adenosylmethionine decarboxylase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction DAHPSYN-RXN == * direction: ** reversible * common-name: ** 2-dehydro-3-deoxyphosphoheptonate aldolase * ec-number: ** [http://enzyme.expasy....")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SAMDECARB-RXN ==
+
== Reaction DAHPSYN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** adenosylmethionine decarboxylase
+
** 2-dehydro-3-deoxyphosphoheptonate aldolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50]
+
** [http://enzyme.expasy.org/EC/2.5.1.54 ec-2.5.1.54]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c]
+
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16226]]
+
* Gene: [[SJ04251]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07458]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
+
* [[PWY-6164]], 3-dehydroquinate biosynthesis I:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6834]], spermidine biosynthesis III:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[ARGSPECAT-PWY]], spermine biosynthesis:
 
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97218
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14720 14720]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01826 R01826]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P82184 P82184]
+
** [http://www.uniprot.org/uniprot/P0A1B5 P0A1B5]
−
** [http://www.uniprot.org/uniprot/P21182 P21182]
+
** [http://www.uniprot.org/uniprot/Q9JSQ8 Q9JSQ8]
−
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
+
** [http://www.uniprot.org/uniprot/P00887 P00887]
−
** [http://www.uniprot.org/uniprot/P17707 P17707]
+
** [http://www.uniprot.org/uniprot/P0AB91 P0AB91]
−
** [http://www.uniprot.org/uniprot/P28918 P28918]
+
** [http://www.uniprot.org/uniprot/P00888 P00888]
−
** [http://www.uniprot.org/uniprot/P17708 P17708]
+
** [http://www.uniprot.org/uniprot/Q9PPJ1 Q9PPJ1]
−
** [http://www.uniprot.org/uniprot/P50243 P50243]
+
** [http://www.uniprot.org/uniprot/P46245 P46245]
−
** [http://www.uniprot.org/uniprot/P46255 P46255]
+
** [http://www.uniprot.org/uniprot/P35170 P35170]
−
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
+
** [http://www.uniprot.org/uniprot/P44303 P44303]
−
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
+
** [http://www.uniprot.org/uniprot/P34725 P34725]
−
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
+
** [http://www.uniprot.org/uniprot/P39912 P39912]
−
** [http://www.uniprot.org/uniprot/P79888 P79888]
+
** [http://www.uniprot.org/uniprot/P14843 P14843]
−
** [http://www.uniprot.org/uniprot/O04009 O04009]
+
** [http://www.uniprot.org/uniprot/Q02285 Q02285]
−
** [http://www.uniprot.org/uniprot/O24575 O24575]
+
** [http://www.uniprot.org/uniprot/P32449 P32449]
−
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
+
** [http://www.uniprot.org/uniprot/P37215 P37215]
−
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
+
** [http://www.uniprot.org/uniprot/P37216 P37216]
−
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
+
** [http://www.uniprot.org/uniprot/Q09755 Q09755]
−
** [http://www.uniprot.org/uniprot/O49972 O49972]
+
** [http://www.uniprot.org/uniprot/Q00218 Q00218]
−
** [http://www.uniprot.org/uniprot/O65354 O65354]
+
** [http://www.uniprot.org/uniprot/P29976 P29976]
−
** [http://www.uniprot.org/uniprot/O02655 O02655]
+
** [http://www.uniprot.org/uniprot/Q42921 Q42921]
 +
** [http://www.uniprot.org/uniprot/O22407 O22407]
 +
** [http://www.uniprot.org/uniprot/O52798 O52798]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=adenosylmethionine decarboxylase}}
+
{{#set: common-name=2-dehydro-3-deoxyphosphoheptonate aldolase}}
−
{{#set: ec-number=ec-4.1.1.50}}
+
{{#set: ec-number=ec-2.5.1.54}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction DAHPSYN-RXN

  • direction:
    • reversible
  • common-name:
    • 2-dehydro-3-deoxyphosphoheptonate aldolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6164, 3-dehydroquinate biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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