Difference between revisions of "DAHPSYN-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-191410 tax-...")
(Created page with "Category:reaction == Reaction DAHPSYN-RXN == * direction: ** reversible * common-name: ** 2-dehydro-3-deoxyphosphoheptonate aldolase * ec-number: ** [http://enzyme.expasy....")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] ==
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== Reaction DAHPSYN-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-191410 tax-191410]
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** reversible
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1117 tax-1117]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2763 tax-2763]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
 
 
* common-name:
 
* common-name:
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** trans-lycopene biosynthesis ii (oxygenic phototrophs and green sulfur bacteria)
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** 2-dehydro-3-deoxyphosphoheptonate aldolase
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== Reaction(s) found ==
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* ec-number:
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* [[2.5.1.32-RXN]]
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** [http://enzyme.expasy.org/EC/2.5.1.54 ec-2.5.1.54]
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* [[RXN-11354]]
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== Reaction formula ==
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* [[RXN-11356]]
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* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''+''' 1 [[Pi]][c]
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* [[RXN-11357]]
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== Gene(s) associated with this reaction  ==
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* [[RXN-12243]]
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* Gene: [[SJ04251]]
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* [[RXN-12244]]
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** Category: [[annotation]]
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* [[RXN-8042]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXNARA-8002]]
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** Category: [[orthology]]
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== Reaction(s) not found ==
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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All reactions of this pathways are in present
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: taxonomic-range=tax-33090|tax-2763|tax-1117|tax-191410}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=trans-lycopene biosynthesis ii (oxygenic phototrophs and green sulfur bacteria)}}
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== Pathway(s) ==
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{{#set: nb reaction found=8}}
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* [[PWY-6164]], 3-dehydroquinate biosynthesis I:
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{{#set: completion rate=1.0}}
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** '''2''' reactions found over '''2''' reactions in the full pathway
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{{#set: nb total reaction=8}}
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR97218
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14720 14720]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01826 R01826]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P0A1B5 P0A1B5]
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** [http://www.uniprot.org/uniprot/Q9JSQ8 Q9JSQ8]
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** [http://www.uniprot.org/uniprot/P00887 P00887]
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** [http://www.uniprot.org/uniprot/P0AB91 P0AB91]
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** [http://www.uniprot.org/uniprot/P00888 P00888]
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** [http://www.uniprot.org/uniprot/Q9PPJ1 Q9PPJ1]
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** [http://www.uniprot.org/uniprot/P46245 P46245]
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** [http://www.uniprot.org/uniprot/P35170 P35170]
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** [http://www.uniprot.org/uniprot/P44303 P44303]
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** [http://www.uniprot.org/uniprot/P34725 P34725]
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** [http://www.uniprot.org/uniprot/P39912 P39912]
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** [http://www.uniprot.org/uniprot/P14843 P14843]
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** [http://www.uniprot.org/uniprot/Q02285 Q02285]
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** [http://www.uniprot.org/uniprot/P32449 P32449]
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** [http://www.uniprot.org/uniprot/P37215 P37215]
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** [http://www.uniprot.org/uniprot/P37216 P37216]
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** [http://www.uniprot.org/uniprot/Q09755 Q09755]
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** [http://www.uniprot.org/uniprot/Q00218 Q00218]
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** [http://www.uniprot.org/uniprot/P29976 P29976]
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** [http://www.uniprot.org/uniprot/Q42921 Q42921]
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** [http://www.uniprot.org/uniprot/O22407 O22407]
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** [http://www.uniprot.org/uniprot/O52798 O52798]
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</div>
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{{#set: direction=reversible}}
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{{#set: common-name=2-dehydro-3-deoxyphosphoheptonate aldolase}}
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{{#set: ec-number=ec-2.5.1.54}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction DAHPSYN-RXN

  • direction:
    • reversible
  • common-name:
    • 2-dehydro-3-deoxyphosphoheptonate aldolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6164, 3-dehydroquinate biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DAHPSYN-RXN&oldid=141731"