Difference between revisions of "DALADALALIG-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MCDH_LPAREN_2mb2coa_RPAREN_ MCDH_LPAREN_2mb2coa_RPAREN_] == * direction: ** left-to-right * common-...")
(Created page with "Category:reaction == Reaction DALADALALIG-RXN == * direction: ** left-to-right * common-name: ** d-alanine-d-alanine ligase * ec-number: ** [http://enzyme.expasy.org/EC/6....")
 
(8 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MCDH_LPAREN_2mb2coa_RPAREN_ MCDH_LPAREN_2mb2coa_RPAREN_] ==
+
== Reaction DALADALALIG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-methylacyl-coa dehydrogenase, trans-2-methylbut-2-enoyl-coa forming
+
** d-alanine-d-alanine ligase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.3.2.4 ec-6.3.2.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[2-METHYL-BUTYRYL-COA]][m] '''+''' 1.0 [[FAD]][m] '''=>''' 1.0 [[CPD-1083]][m] '''+''' 1.0 [[FADH2]][m]
+
* 1 [[ATP]][c] '''+''' 2 [[D-ALANINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-ALA-D-ALA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07241]]
+
* Gene: [[SJ17851]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12670]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02214]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12870]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06726]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7953]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing):
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing):
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR95678
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11224 11224]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01150 R01150]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O83676 O83676]
 +
** [http://www.uniprot.org/uniprot/O66806 O66806]
 +
** [http://www.uniprot.org/uniprot/P46805 P46805]
 +
** [http://www.uniprot.org/uniprot/P0A1F0 P0A1F0]
 +
** [http://www.uniprot.org/uniprot/P0A6J8 P0A6J8]
 +
** [http://www.uniprot.org/uniprot/P07862 P07862]
 +
** [http://www.uniprot.org/uniprot/P96612 P96612]
 +
** [http://www.uniprot.org/uniprot/Q9ZDS6 Q9ZDS6]
 +
** [http://www.uniprot.org/uniprot/Q9CIL5 Q9CIL5]
 +
** [http://www.uniprot.org/uniprot/P44405 P44405]
 +
** [http://www.uniprot.org/uniprot/Q9PPC2 Q9PPC2]
 +
** [http://www.uniprot.org/uniprot/Q9JSZ9 Q9JSZ9]
 +
** [http://www.uniprot.org/uniprot/P35660 P35660]
 +
** [http://www.uniprot.org/uniprot/P73632 P73632]
 +
** [http://www.uniprot.org/uniprot/Q9XAK7 Q9XAK7]
 +
** [http://www.uniprot.org/uniprot/Q9RLE4 Q9RLE4]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-methylacyl-coa dehydrogenase, trans-2-methylbut-2-enoyl-coa forming}}
+
{{#set: common-name=d-alanine-d-alanine ligase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-6.3.2.4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=5}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction DALADALALIG-RXN

  • direction:
    • left-to-right
  • common-name:
    • d-alanine-d-alanine ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7953, UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing):
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6386, UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing):
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6387, UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
    • 2 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DALADALALIG-RXN&oldid=140438"