Difference between revisions of "DAPASYN-RXN"
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(Created page with "Category:reaction == Reaction RXN-10947 == * direction: ** left-to-right * common-name: ** phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase * ec-number: ** [http://e...") |
(Created page with "Category:reaction == Reaction DAPASYN-RXN == * direction: ** reversible * common-name: ** 7,8-diaminopelargonic acid synthase * ec-number: ** [http://enzyme.expasy.org/EC/...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction DAPASYN-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** reversible |
* common-name: | * common-name: | ||
| − | ** | + | ** 7,8-diaminopelargonic acid synthase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.6.1.62 ec-2.6.1.62] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[8-AMINO-7-OXONONANOATE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''<=>''' 1 [[DIAMINONONANOATE]][c] '''+''' 1 [[S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ14599]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[ | + | * [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: |
| − | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * METANETX-RXN : MNXR95806 | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16864 16864] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03231 R03231] |
| − | {{#set: direction= | + | * UNIPROT: |
| − | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/Q58696 Q58696] |
| − | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/P53555 P53555] |
| + | ** [http://www.uniprot.org/uniprot/P44426 P44426] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9JV96 Q9JV96] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9PIJ2 Q9PIJ2] | ||
| + | ** [http://www.uniprot.org/uniprot/P46395 P46395] | ||
| + | ** [http://www.uniprot.org/uniprot/P53656 P53656] | ||
| + | ** [http://www.uniprot.org/uniprot/P22805 P22805] | ||
| + | ** [http://www.uniprot.org/uniprot/P45488 P45488] | ||
| + | ** [http://www.uniprot.org/uniprot/P12995 P12995] | ||
| + | {{#set: direction=reversible}} | ||
| + | {{#set: common-name=7,8-diaminopelargonic acid synthase}} | ||
| + | {{#set: ec-number=ec-2.6.1.62}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:23, 18 March 2021
Contents
Reaction DAPASYN-RXN
- direction:
- reversible
- common-name:
- 7,8-diaminopelargonic acid synthase
- ec-number:
Reaction formula
- 1 8-AMINO-7-OXONONANOATE[c] + 1 S-ADENOSYLMETHIONINE[c] <=> 1 DIAMINONONANOATE[c] + 1 S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE[c]
Gene(s) associated with this reaction
- Gene: SJ14599
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I:
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR95806
- RHEA:
- LIGAND-RXN:
- UNIPROT:
