Difference between revisions of "DAPASYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-9662 == * direction: ** left-to-right * common-name: ** trans tetradec-2-enoyl-[acp] reductase ** myristoyl-[acyl-carrier-protein] reduct...")
(Created page with "Category:reaction == Reaction DAPASYN-RXN == * direction: ** reversible * common-name: ** 7,8-diaminopelargonic acid synthase * ec-number: ** [http://enzyme.expasy.org/EC/...")
 
(3 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9662 ==
+
== Reaction DAPASYN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** trans tetradec-2-enoyl-[acp] reductase
+
** 7,8-diaminopelargonic acid synthase
−
** myristoyl-[acyl-carrier-protein] reductase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.9 ec-1.3.1.9]
+
** [http://enzyme.expasy.org/EC/2.6.1.62 ec-2.6.1.62]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''=>''' 1 [[Myristoyl-ACPs]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[8-AMINO-7-OXONONANOATE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''<=>''' 1 [[DIAMINONONANOATE]][c] '''+''' 1 [[S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03883]]
+
* Gene: [[SJ14599]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I:
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR95806
−
{{#set: common-name=myristoyl-[acyl-carrier-protein] reductase|trans tetradec-2-enoyl-[acp] reductase}}
+
* RHEA:
−
{{#set: ec-number=ec-1.3.1.9}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16864 16864]
−
{{#set: nb gene associated=2}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03231 R03231]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q58696 Q58696]
 +
** [http://www.uniprot.org/uniprot/P53555 P53555]
 +
** [http://www.uniprot.org/uniprot/P44426 P44426]
 +
** [http://www.uniprot.org/uniprot/Q9JV96 Q9JV96]
 +
** [http://www.uniprot.org/uniprot/Q9PIJ2 Q9PIJ2]
 +
** [http://www.uniprot.org/uniprot/P46395 P46395]
 +
** [http://www.uniprot.org/uniprot/P53656 P53656]
 +
** [http://www.uniprot.org/uniprot/P22805 P22805]
 +
** [http://www.uniprot.org/uniprot/P45488 P45488]
 +
** [http://www.uniprot.org/uniprot/P12995 P12995]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=7,8-diaminopelargonic acid synthase}}
 +
{{#set: ec-number=ec-2.6.1.62}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction DAPASYN-RXN

  • direction:
    • reversible
  • common-name:
    • 7,8-diaminopelargonic acid synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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