Difference between revisions of "DATPtm"

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(Created page with "Category:reaction == Reaction RXN0-1147 == * direction: ** reversible * common-name: ** dihydrolipoyltranssuccinylase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.61...")
(Created page with "Category:reaction == Reaction NADPH-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** nadph dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.6....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-1147 ==
+
== Reaction NADPH-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** dihydrolipoyltranssuccinylase
+
** nadph dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.61 ec-2.3.1.61]
+
** [http://enzyme.expasy.org/EC/1.6.99.1 ec-1.6.99.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Oxo-glutarate-dehydrogenase-DH-lipoyl]][c] '''+''' 1 [[SUC-COA]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
+
* 1 [[Acceptor]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[Donor-H2]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02117]]
+
* Gene: [[SJ22257]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19201]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13629]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06474]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13152 13152]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02570 R02570]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00282 R00282]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P43084 P43084]
 +
** [http://www.uniprot.org/uniprot/Q02899 Q02899]
 +
** [http://www.uniprot.org/uniprot/Q03558 Q03558]
 +
** [http://www.uniprot.org/uniprot/P41816 P41816]
 +
** [http://www.uniprot.org/uniprot/Q42850 Q42850]
 +
** [http://www.uniprot.org/uniprot/P40952 P40952]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=dihydrolipoyltranssuccinylase}}
+
{{#set: common-name=nadph dehydrogenase}}
−
{{#set: ec-number=ec-2.3.1.61}}
+
{{#set: ec-number=ec-1.6.99.1}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:35, 5 January 2021

Reaction NADPH-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • nadph dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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