Difference between revisions of "DCTP"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9543 RXN-9543] == * direction: ** left-to-right * common-name: ** 3-oxo-stearoyl-coa synthase *...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7836 RXN-7836] == * direction: ** reversible * common-name: ** peroxisomal 3,2-trans-enoyl-coa...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9543 RXN-9543] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7836 RXN-7836] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3-oxo-stearoyl-coa synthase
+
** peroxisomal 3,2-trans-enoyl-coa isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199]
+
** [http://enzyme.expasy.org/EC/5.3.3.8 ec-5.3.3.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALONYL-COA]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-10260]][c]
+
* 1 [[Trans-3-enoyl-CoAs]][c] '''<=>''' 1 [[TRANS-D2-ENOYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00613]]
+
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ11169]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5972]], stearate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972]
+
* [[PWY-6837]], fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6837 PWY-6837]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5138]], unsaturated, even numbered fatty acid &beta;-oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5138 PWY-5138]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=reversible}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07758 R07758]
+
{{#set: common-name=peroxisomal 3,2-trans-enoyl-coa isomerase}}
−
{{#set: direction=left-to-right}}
+
{{#set: ec-number=ec-5.3.3.8}}
−
{{#set: common-name=3-oxo-stearoyl-coa synthase}}
+
{{#set: nb gene associated=2}}
−
{{#set: ec-number=ec-2.3.1.199}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb gene associated=4}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN-7836

  • direction:
    • reversible
  • common-name:
    • peroxisomal 3,2-trans-enoyl-coa isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6837, fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent): PWY-6837
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5138, unsaturated, even numbered fatty acid β-oxidation: PWY-5138
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DCTP&oldid=34632"