Difference between revisions of "DCTUP"

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(Created page with "Category:reaction == Reaction ASPCARBTRANS-RXN == * direction: ** reversible * common-name: ** aspartate transcarbamylase * ec-number: ** [http://enzyme.expasy.org/EC/2.1....")
(Created page with "Category:reaction == Reaction RXN-17927 == * direction: ** left-to-right == Reaction formula == * 1 3Prime-OH-Terminated-RNAs[c] '''+''' 1 A-5-prime-PP-5-prime-RNA...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction ASPCARBTRANS-RXN ==
+
== Reaction RXN-17927 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** aspartate transcarbamylase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.1.3.2 ec-2.1.3.2]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[3Prime-OH-Terminated-RNAs]][c] '''+''' 1 [[A-5-prime-PP-5-prime-RNA]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[RNA-Holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18541]]
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* Gene: [[SJ03634]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17851]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ15949]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5686]], UMP biosynthesis I:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7790]], UMP biosynthesis II:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7791]], UMP biosynthesis III:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: direction=left-to-right}}
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* RHEA:
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{{#set: nb gene associated=1}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20016 20016]
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{{#set: nb pathway associated=0}}
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* LIGAND-RXN:
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{{#set: reconstruction category=annotation}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01397 R01397]
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{{#set: reconstruction tool=pathwaytools}}
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P08955 P08955]
 
−
** [http://www.uniprot.org/uniprot/P27708 P27708]
 
−
** [http://www.uniprot.org/uniprot/Q04595 Q04595]
 
−
** [http://www.uniprot.org/uniprot/Q59711 Q59711]
 
−
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 
−
** [http://www.uniprot.org/uniprot/P65616 P65616]
 
−
** [http://www.uniprot.org/uniprot/Q59712 Q59712]
 
−
** [http://www.uniprot.org/uniprot/Q9CF79 Q9CF79]
 
−
** [http://www.uniprot.org/uniprot/Q58976 Q58976]
 
−
** [http://www.uniprot.org/uniprot/P08421 P08421]
 
−
** [http://www.uniprot.org/uniprot/P0A786 P0A786]
 
−
** [http://www.uniprot.org/uniprot/P0A7F3 P0A7F3]
 
−
** [http://www.uniprot.org/uniprot/P19936 P19936]
 
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** [http://www.uniprot.org/uniprot/Q58801 Q58801]
 
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** [http://www.uniprot.org/uniprot/Q9PNJ6 Q9PNJ6]
 
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** [http://www.uniprot.org/uniprot/P05654 P05654]
 
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** [http://www.uniprot.org/uniprot/P0A1Z4 P0A1Z4]
 
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** [http://www.uniprot.org/uniprot/P19910 P19910]
 
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** [http://www.uniprot.org/uniprot/P07259 P07259]
 
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** [http://www.uniprot.org/uniprot/P20054 P20054]
 
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** [http://www.uniprot.org/uniprot/P05990 P05990]
 
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** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 
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** [http://www.uniprot.org/uniprot/Q09027 Q09027]
 
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** [http://www.uniprot.org/uniprot/P49077 P49077]
 
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** [http://www.uniprot.org/uniprot/Q9S983 Q9S983]
 
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** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 
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** [http://www.uniprot.org/uniprot/P74163 P74163]
 
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** [http://www.uniprot.org/uniprot/Q43064 Q43064]
 
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** [http://www.uniprot.org/uniprot/Q43086 Q43086]
 
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** [http://www.uniprot.org/uniprot/Q43087 Q43087]
 
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** [http://www.uniprot.org/uniprot/Q84493 Q84493]
 
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** [http://www.uniprot.org/uniprot/Q9UAH8 Q9UAH8]
 
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** [http://www.uniprot.org/uniprot/Q60252 Q60252]
 
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** [http://www.uniprot.org/uniprot/P96174 P96174]
 
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** [http://www.uniprot.org/uniprot/P96175 P96175]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=aspartate transcarbamylase}}
 
−
{{#set: ec-number=ec-2.1.3.2}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:13, 14 January 2021

Reaction RXN-17927

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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