Difference between revisions of "DETHIOBIOTIN-SYN-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11480 RXN-11480] == * direction: ** left-to-right * common-name: ** 3-oxo-pimeloyl-[acp] methyl...")
 
(Created page with "Category:reaction == Reaction DETHIOBIOTIN-SYN-RXN == * direction: ** left-to-right * common-name: ** dethiobiotin synthetase * ec-number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11480 RXN-11480] ==
+
== Reaction DETHIOBIOTIN-SYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxo-pimeloyl-[acp] methyl ester reductase
+
** dethiobiotin synthetase
−
** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/6.3.3.3 ec-6.3.3.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-Ketopimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-hydroxypimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DIAMINONONANOATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17743]]
+
* Gene: [[SJ14599]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04229]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13014]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 23: Line 16:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519]
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I:
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97180
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15805 15805]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03182 R03182]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JV95 Q9JV95]
 +
** [http://www.uniprot.org/uniprot/Q9PIJ1 Q9PIJ1]
 +
** [http://www.uniprot.org/uniprot/P46397 P46397]
 +
** [http://www.uniprot.org/uniprot/P22818 P22818]
 +
** [http://www.uniprot.org/uniprot/P13000 P13000]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxo-pimeloyl-[acp] methyl ester reductase|3-oxoacyl-[acyl-carrier-protein] reductase (nadph)}}
+
{{#set: common-name=dethiobiotin synthetase}}
−
{{#set: ec-number=ec-1.1.1.100}}
+
{{#set: ec-number=ec-6.3.3.3}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction DETHIOBIOTIN-SYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • dethiobiotin synthetase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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