Difference between revisions of "DETHIOBIOTIN-SYN-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11480 RXN-11480] == * direction: ** left-to-right * common-name: ** 3-oxo-pimeloyl-[acp] methyl...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104] == * direction: ** left-to-right * common-name: ** caffeate 3-o-methyltransferas...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11480 RXN-11480] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxo-pimeloyl-[acp] methyl ester reductase
+
** caffeate 3-o-methyltransferase
−
** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
+
** caffeate o-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/2.1.1.68 ec-2.1.1.68]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-Ketopimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-hydroxypimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[CPD-676]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FERULIC-ACID]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17743]]
+
* Gene: [[SJ07699]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ04229]]
+
* Gene: [[SJ09797]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13014]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17434]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519]
+
* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7498]], phenylpropanoids methylation (ice plant): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7498 PWY-7498]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7186]], superpathway of scopolin and esculin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7186 PWY-7186]
 +
** '''2''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20226 20226]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03366 R03366]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q41086 Q41086]
 +
** [http://www.uniprot.org/uniprot/P28002 P28002]
 +
** [http://www.uniprot.org/uniprot/Q00763 Q00763]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxo-pimeloyl-[acp] methyl ester reductase|3-oxoacyl-[acyl-carrier-protein] reductase (nadph)}}
+
{{#set: common-name=caffeate 3-o-methyltransferase|caffeate o-methyltransferase}}
−
{{#set: ec-number=ec-1.1.1.100}}
+
{{#set: ec-number=ec-2.1.1.68}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction RXN-1104

  • direction:
    • left-to-right
  • common-name:
    • caffeate 3-o-methyltransferase
    • caffeate o-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2181, free phenylpropanoid acid biosynthesis: PWY-2181
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7498, phenylpropanoids methylation (ice plant): PWY-7498
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-7186, superpathway of scopolin and esculin biosynthesis: PWY-7186
    • 2 reactions found over 12 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 9 reactions found over 19 reactions in the full pathway

Reconstruction information

External links





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