Difference between revisions of "DGDPKIN-RXN"

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(Created page with "Category:reaction == Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN == * direction: ** reversible * common-name: ** benzaldehyde dehydrogenase (nad+) * ec-number: ** [http:/...")
(Created page with "Category:reaction == Reaction RXN-1884 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.316 ec-1.1.1.316] == Reaction formula == * 1 L...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN ==
+
== Reaction RXN-1884 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** benzaldehyde dehydrogenase (nad+)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.28 ec-1.2.1.28]
+
** [http://enzyme.expasy.org/EC/1.1.1.316 ec-1.1.1.316]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[BENZALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BENZOATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[L-Galactopyranose]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD-330]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06456]]
+
* Gene: [[SJ12807]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06470]]
+
* Gene: [[SJ20690]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07048]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15799]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20140]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6766]], salicin biosynthesis:
+
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway):
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6763]], salicortin biosynthesis:
 
−
** '''1''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-&beta;-oxidative):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[TOLUENE-DEG-CATECHOL-PWY]], toluene degradation to benzoate:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-1501]], mandelate degradation I:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6446]], benzoate biosynthesis III (CoA-dependent, non-&beta;-oxidative):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31562 31562]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01419 R01419]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07675 R07675]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P43503 P43503]
+
{{#set: ec-number=ec-1.1.1.316}}
−
{{#set: direction=reversible}}
+
{{#set: nb gene associated=5}}
−
{{#set: common-name=benzaldehyde dehydrogenase (nad+)}}
+
{{#set: nb pathway associated=1}}
−
{{#set: ec-number=ec-1.2.1.28}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: nb gene associated=2}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: nb pathway associated=6}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:34, 5 January 2021

Reaction RXN-1884

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-882, L-ascorbate biosynthesis I (L-galactose pathway):
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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