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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction ACETYL-COA-ACETYLTRANSFER-RXN == | + | == Reaction DGOTO == |
| | * direction: | | * direction: |
| − | ** reversible | + | ** left-to-right |
| | * common-name: | | * common-name: |
| − | ** acetyl-coa acetyltransferase | + | ** 2'-deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.9 ec-2.3.1.9]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 2 [[ACETYL-COA]][c] '''<=>''' 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[CO-A]][c] | + | * 1.0 [[GDP]][c] '''+''' 1.0 [[Red-Thioredoxin]][c] '''=>''' 1.0 [[DGDP]][c] '''+''' 1.0 [[Ox-Thioredoxin]][c] '''+''' 1.0 [[WATER]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ09371]] | + | * Gene: [[SJ17066]] |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ14898]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| | ** Category: [[orthology]] | | ** Category: [[orthology]] |
| | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ21818]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * [[PWY-6174]], mevalonate pathway II (archaea):
| |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-6883]], pyruvate fermentation to butanol II (engineered):
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-6876]], isopropanol biosynthesis (engineered):
| |
| − | ** '''2''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[ACETOACETATE-DEG-PWY]], acetoacetate degradation (to acetyl CoA):
| |
| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
| |
| − | * [[PWY-5177]], glutaryl-CoA degradation:
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-6588]], pyruvate fermentation to acetone:
| |
| − | ** '''2''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-922]], mevalonate pathway I:
| |
| − | ** '''7''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-6583]], pyruvate fermentation to butanol I:
| |
| − | ** '''6''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
| |
| − | ** '''8''' reactions found over '''18''' reactions in the full pathway
| |
| − | * [[PWY1-3]], polyhydroxybutanoate biosynthesis:
| |
| − | ** '''2''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered):
| |
| − | ** '''3''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
| |
| − | ** '''6''' reactions found over '''15''' reactions in the full pathway
| |
| − | * [[PWY-7391]], isoprene biosynthesis II (engineered):
| |
| − | ** '''7''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
| |
| − | ** '''7''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[PWY-5741]], ethylmalonyl-CoA pathway:
| |
| − | ** '''2''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
| |
| − | ** '''9''' reactions found over '''11''' reactions in the full pathway
| |
| − | * [[P163-PWY]], L-lysine fermentation to acetate and butanoate:
| |
| − | ** '''3''' reactions found over '''10''' reactions in the full pathway
| |
| − | * [[PWY-7779]], methyl tert-butyl ether degradation:
| |
| − | ** '''2''' reactions found over '''10''' reactions in the full pathway
| |
| − | * [[PWY-7778]], 2-methylpropene degradation:
| |
| − | ** '''3''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-7524]], mevalonate pathway III (archaea):
| |
| − | ** '''5''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY66-368]], ketolysis:
| |
| − | ** '''2''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY66-367]], ketogenesis:
| |
| − | ** '''4''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-5676]], acetyl-CoA fermentation to butanoate II:
| |
| − | ** '''4''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
| |
| − | ** '''5''' reactions found over '''7''' reactions in the full pathway
| |
| − | </div>
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | {{#set: direction=left-to-right}} |
| − | * RHEA:
| + | {{#set: common-name=2'-deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21039 21039]
| + | {{#set: nb gene associated=1}} |
| − | * LIGAND-RXN:
| + | {{#set: nb pathway associated=0}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00238 R00238]
| + | {{#set: reconstruction category=orthology}} |
| − | * UNIPROT:
| + | {{#set: reconstruction tool=pantograph}} |
| − | ** [http://www.uniprot.org/uniprot/Q8CAY6 Q8CAY6]
| |
| − | ** [http://www.uniprot.org/uniprot/P41338 P41338]
| |
| − | ** [http://www.uniprot.org/uniprot/P45362 P45362]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9BWD1 Q9BWD1]
| |
| − | ** [http://www.uniprot.org/uniprot/P45359 P45359]
| |
| − | ** [http://www.uniprot.org/uniprot/P24752 P24752]
| |
| − | ** [http://www.uniprot.org/uniprot/Q12598 Q12598]
| |
| − | ** [http://www.uniprot.org/uniprot/P45369 P45369]
| |
| − | ** [http://www.uniprot.org/uniprot/P46707 P46707]
| |
| − | ** [http://www.uniprot.org/uniprot/P73825 P73825]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43637 Q43637]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9UQW6 Q9UQW6]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9Z3Y4 Q9Z3Y4]
| |
| − | ** [http://www.uniprot.org/uniprot/P77852 P77852]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9XD81 Q9XD81]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9ZGI9 Q9ZGI9]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9L8E0 Q9L8E0]
| |
| − | ** [http://www.uniprot.org/uniprot/P14611 P14611]
| |
| − | ** [http://www.uniprot.org/uniprot/P07097 P07097]
| |
| − | ** [http://www.uniprot.org/uniprot/P17764 P17764]
| |
| − | </div>
| |
| − | {{#set: direction=reversible}} | |
| − | {{#set: common-name=acetyl-coa acetyltransferase}} | |
| − | {{#set: ec-number=ec-2.3.1.9}}
| |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=24}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| | {{#set: reconstruction comment=n.a}} | | {{#set: reconstruction comment=n.a}} |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} |
