Difference between revisions of "DGOTO"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.11.1.12-RXN 1.11.1.12-RXN] == * direction: ** left-to-right * common-name: ** phospholipid-hydrop...")
(Created page with "Category:reaction == Reaction ISOLEUCINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** isoleucine-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.11.1.12-RXN 1.11.1.12-RXN] ==
+
== Reaction ISOLEUCINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phospholipid-hydroperoxide glutathione peroxidase
+
** isoleucine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.11.1.12 ec-1.11.1.12]
+
** [http://enzyme.expasy.org/EC/6.1.1.5 ec-6.1.1.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[A-LIPID-HYDROPEROXIDE]][c] '''+''' 2 [[GLUTATHIONE]][c] '''=>''' 1 [[Lipid-hydroxy-fatty-acids]][c] '''+''' 1 [[OXIDIZED-GLUTATHIONE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[ILE]][c] '''+''' 1 [[ILE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01572]]
+
* Gene: [[SJ03174]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16361]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03173]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-4081]], glutathione-peroxide redox reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4081 PWY-4081]
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19058 19058]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11061 11061]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03167 R03167]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O23814 O23814]
+
** [http://www.uniprot.org/uniprot/P18330 P18330]
−
** [http://www.uniprot.org/uniprot/O48646 O48646]
+
** [http://www.uniprot.org/uniprot/P36422 P36422]
 +
** [http://www.uniprot.org/uniprot/O29622 O29622]
 +
** [http://www.uniprot.org/uniprot/P47587 P47587]
 +
** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
 +
** [http://www.uniprot.org/uniprot/P46213 P46213]
 +
** [http://www.uniprot.org/uniprot/P41257 P41257]
 +
** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
 +
** [http://www.uniprot.org/uniprot/Q58357 Q58357]
 +
** [http://www.uniprot.org/uniprot/O83466 O83466]
 +
** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
 +
** [http://www.uniprot.org/uniprot/P56456 P56456]
 +
** [http://www.uniprot.org/uniprot/O58792 O58792]
 +
** [http://www.uniprot.org/uniprot/O84022 O84022]
 +
** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
 +
** [http://www.uniprot.org/uniprot/O66651 O66651]
 +
** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
 +
** [http://www.uniprot.org/uniprot/O27428 O27428]
 +
** [http://www.uniprot.org/uniprot/Q45477 Q45477]
 +
** [http://www.uniprot.org/uniprot/O51773 O51773]
 +
** [http://www.uniprot.org/uniprot/P46207 P46207]
 +
** [http://www.uniprot.org/uniprot/P41252 P41252]
 +
** [http://www.uniprot.org/uniprot/P41972 P41972]
 +
** [http://www.uniprot.org/uniprot/P48526 P48526]
 +
** [http://www.uniprot.org/uniprot/P75258 P75258]
 +
** [http://www.uniprot.org/uniprot/P73505 P73505]
 +
** [http://www.uniprot.org/uniprot/Q49024 Q49024]
 +
** [http://www.uniprot.org/uniprot/Q49074 Q49074]
 +
** [http://www.uniprot.org/uniprot/P43824 P43824]
 +
** [http://www.uniprot.org/uniprot/P09436 P09436]
 +
** [http://www.uniprot.org/uniprot/P00956 P00956]
 +
** [http://www.uniprot.org/uniprot/Q94425 Q94425]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phospholipid-hydroperoxide glutathione peroxidase}}
+
{{#set: common-name=isoleucine-trna ligase}}
−
{{#set: ec-number=ec-1.11.1.12}}
+
{{#set: ec-number=ec-6.1.1.5}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:39, 18 December 2020

Reaction ISOLEUCINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • isoleucine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DGOTO&oldid=49245"