Difference between revisions of "DHHB-METHYLTRANSFER-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] == * direction: ** left-to-right * common-name: ** beta-glucosidase ** coumarini...")
 
(Created page with "Category:reaction == Reaction DHHB-METHYLTRANSFER-RXN == * direction: ** left-to-right * common-name: ** 3-demethylubiquinone-8 3-o-methyltransferase * ec-number: ** [http...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] ==
+
== Reaction DHHB-METHYLTRANSFER-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** beta-glucosidase
+
** 3-demethylubiquinone-8 3-o-methyltransferase
−
** coumarinic acid glucoside β-glucosidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.21 ec-3.2.1.21]
+
** [http://enzyme.expasy.org/EC/2.1.1.64 ec-2.1.1.64]
 +
* synonymous:
 +
** 5-demethylubiquinone-8 methyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-7417]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-7418]][c] '''+''' 1 [[Glucopyranose]][c]
+
* 1 [[OCTAPRENYL-METHYL-OH-METHOXY-BENZQ]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-9956]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ16864]]
−
* Gene: [[SJ05257]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14973]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05533]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05740]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05741]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18897]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11958]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04559]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04558]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05532]]
+
* Gene: [[SJ13007]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14193]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00855]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05782]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19930]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18318]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16402]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17199]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5176]], coumarin biosynthesis (via 2-coumarate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176]
+
* [[PWY-6708]], ubiquinol-8 biosynthesis (early decarboxylation):
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5870]], ubiquinol-8 biosynthesis (late decarboxylation):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97527
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31224 31224]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28680 28680]
−
* LIGAND-RXN:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04998 R04998]
+
** [http://www.uniprot.org/uniprot/P17993 P17993]
 +
** [http://www.uniprot.org/uniprot/Q9JWE6 Q9JWE6]
 +
** [http://www.uniprot.org/uniprot/Q9ZCT9 Q9ZCT9]
 +
** [http://www.uniprot.org/uniprot/P37431 P37431]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=beta-glucosidase|coumarinic acid glucoside &beta;-glucosidase}}
+
{{#set: common-name=3-demethylubiquinone-8 3-o-methyltransferase}}
−
{{#set: ec-number=ec-3.2.1.21}}
+
{{#set: ec-number=ec-2.1.1.64}}
−
{{#set: nb gene associated=17}}
+
{{#set: synonymous=5-demethylubiquinone-8 methyltransferase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction DHHB-METHYLTRANSFER-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3-demethylubiquinone-8 3-o-methyltransferase
  • ec-number:
  • synonymous:
    • 5-demethylubiquinone-8 methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6708, ubiquinol-8 biosynthesis (early decarboxylation):
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-5870, ubiquinol-8 biosynthesis (late decarboxylation):
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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