Difference between revisions of "DIAMINOPIMDECARB-RXN"
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(Created page with "Category:reaction == Reaction RXN-9538 == * direction: ** left-to-right * common-name: ** trans tetradec-2-enoyl-[acyl-carrier-protein] reductase (nadph, b-specific) ** fa...") |
(Created page with "Category:reaction == Reaction RXN-5286 == * direction: ** left-to-right * common-name: ** 3,8-divinyl-chlorophyllide 8-vinyl reductase * ec-number: ** [http://enzyme.expas...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-5286 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** 3,8-divinyl-chlorophyllide 8-vinyl reductase |
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* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.3.1. | + | ** [http://enzyme.expasy.org/EC/1.3.1.75 ec-1.3.1.75] |
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== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DIVINYLCHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ12431]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
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− | ** Category: [[ | ||
− | *** Source: [[ | ||
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== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-5086]], chlorophyll a biosynthesis I: |
− | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
+ | * [[PWY-7760]], bacteriochlorophyll e biosynthesis: | ||
+ | ** '''1''' reactions found over '''30''' reactions in the full pathway | ||
+ | * [[PWY-7758]], bacteriochlorophyll d biosynthesis: | ||
+ | ** '''1''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY-7759]], bacteriochlorophyll c biosynthesis: | ||
+ | ** '''1''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-5064]], chlorophyll a biosynthesis II: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5526]], bacteriochlorophyll a biosynthesis: | ||
+ | ** '''5''' reactions found over '''13''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14451 14451] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R06272 R06272] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=3,8-divinyl-chlorophyllide 8-vinyl reductase}} |
− | {{#set: ec-number=ec-1.3.1. | + | {{#set: ec-number=ec-1.3.1.75}} |
− | + | {{#set: nb gene associated=1}} | |
− | {{#set: nb gene associated= | + | {{#set: nb pathway associated=6}} |
− | {{#set: nb pathway associated= | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
− | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Revision as of 11:23, 15 January 2021
Contents
Reaction RXN-5286
- direction:
- left-to-right
- common-name:
- 3,8-divinyl-chlorophyllide 8-vinyl reductase
- ec-number:
Reaction formula
- 1 DIVINYLCHLOROPHYLLIDE-A[c] + 1 NADPH[c] + 1 PROTON[c] => 1 CHLOROPHYLLIDE-A[c] + 1 NADP[c]
Gene(s) associated with this reaction
- Gene: SJ12431
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5086, chlorophyll a biosynthesis I:
- 2 reactions found over 2 reactions in the full pathway
- PWY-7760, bacteriochlorophyll e biosynthesis:
- 1 reactions found over 30 reactions in the full pathway
- PWY-7758, bacteriochlorophyll d biosynthesis:
- 1 reactions found over 14 reactions in the full pathway
- PWY-7759, bacteriochlorophyll c biosynthesis:
- 1 reactions found over 18 reactions in the full pathway
- PWY-5064, chlorophyll a biosynthesis II:
- 5 reactions found over 5 reactions in the full pathway
- PWY-5526, bacteriochlorophyll a biosynthesis:
- 5 reactions found over 13 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links