Difference between revisions of "DIAMINOPIMDECARB-RXN"

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(Created page with "Category:reaction == Reaction RXN-3521 == * direction: ** left-to-right * common-name: ** l-ascorbate peroxidase * synonymous: ** l-ascorbic acid-specific peroxidase ** as...")
(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * direction: ** left-to-right * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.o...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-3521 ==
+
== Reaction DIAMINOPIMDECARB-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-ascorbate peroxidase
+
** diaminopimelate decarboxylase
−
* synonymous:
+
* ec-number:
−
** l-ascorbic acid-specific peroxidase
+
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
−
** ascorbic acid peroxidase
 
−
** l-ascorbic acid peroxidase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[ASCORBATE]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CPD-318]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04585]]
+
* Gene: [[SJ09103]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14435]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00674]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17253]]
+
* Gene: [[SJ21359]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16420]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2261]], ascorbate glutathione cycle:
+
* [[PWY-2942]], L-lysine biosynthesis III:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5097]], L-lysine biosynthesis VI:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2941]], L-lysine biosynthesis II:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97141
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R09540 R09540]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30266 30266]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P48534 P48534]
+
** [http://www.uniprot.org/uniprot/P19572 P19572]
−
** [http://www.uniprot.org/uniprot/Q7M287 Q7M287]
+
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
−
** [http://www.uniprot.org/uniprot/O49159 O49159]
+
** [http://www.uniprot.org/uniprot/P44316 P44316]
−
** [http://www.uniprot.org/uniprot/Q7M3G0 Q7M3G0]
+
** [http://www.uniprot.org/uniprot/P56129 P56129]
−
** [http://www.uniprot.org/uniprot/Q05431 Q05431]
+
** [http://www.uniprot.org/uniprot/O67262 O67262]
−
** [http://www.uniprot.org/uniprot/Q43824 Q43824]
+
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
−
** [http://www.uniprot.org/uniprot/Q41772 Q41772]
+
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
−
** [http://www.uniprot.org/uniprot/Q41371 Q41371]
+
** [http://www.uniprot.org/uniprot/P00861 P00861]
−
** [http://www.uniprot.org/uniprot/Q42661 Q42661]
+
** [http://www.uniprot.org/uniprot/O27390 O27390]
−
** [http://www.uniprot.org/uniprot/Q42564 Q42564]
+
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
−
** [http://www.uniprot.org/uniprot/O46921 O46921]
+
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
−
** [http://www.uniprot.org/uniprot/P93404 P93404]
+
** [http://www.uniprot.org/uniprot/O29458 O29458]
−
** [http://www.uniprot.org/uniprot/Q9FE01 Q9FE01]
+
** [http://www.uniprot.org/uniprot/P41023 P41023]
−
** [http://www.uniprot.org/uniprot/O65634 O65634]
+
** [http://www.uniprot.org/uniprot/P23630 P23630]
−
** [http://www.uniprot.org/uniprot/Q39843 Q39843]
+
** [http://www.uniprot.org/uniprot/P09890 P09890]
−
** [http://www.uniprot.org/uniprot/O49122 O49122]
+
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
−
** [http://www.uniprot.org/uniprot/O49822 O49822]
+
** [http://www.uniprot.org/uniprot/O05321 O05321]
−
** [http://www.uniprot.org/uniprot/Q42459 Q42459]
 
−
** [http://www.uniprot.org/uniprot/Q39780 Q39780]
 
−
** [http://www.uniprot.org/uniprot/Q96399 Q96399]
 
−
** [http://www.uniprot.org/uniprot/O81333 O81333]
 
−
** [http://www.uniprot.org/uniprot/O81603 O81603]
 
−
** [http://www.uniprot.org/uniprot/O81604 O81604]
 
−
** [http://www.uniprot.org/uniprot/Q42909 Q42909]
 
−
** [http://www.uniprot.org/uniprot/Q9STM9 Q9STM9]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-ascorbate peroxidase}}
+
{{#set: common-name=diaminopimelate decarboxylase}}
−
{{#set: synonymous=l-ascorbic acid peroxidase|ascorbic acid peroxidase|l-ascorbic acid-specific peroxidase}}
+
{{#set: ec-number=ec-4.1.1.20}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction DIAMINOPIMDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • diaminopimelate decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2942, L-lysine biosynthesis III:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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