Difference between revisions of "DIAMINOPIMDECARB-RXN"

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(Created page with "Category:reaction == Reaction RXN-4315-CPD-4207/WATER//CPD0-1108/CPD-4209.35. == * direction: ** reversible == Reaction formula == * 1.0 CPD-4207[c] '''+''' 1.0 WATE...")
(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * direction: ** left-to-right * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.o...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-4315-CPD-4207/WATER//CPD0-1108/CPD-4209.35. ==
+
== Reaction DIAMINOPIMDECARB-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** diaminopimelate decarboxylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CPD-4207]][c] '''+''' 1.0 [[WATER]][c] '''<=>''' 1.0 [[CPD-4209]][c] '''+''' 1.0 [[CPD0-1108]][c]
+
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ09103]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00674]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21359]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-2942]], L-lysine biosynthesis III:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5097]], L-lysine biosynthesis VI:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2941]], L-lysine biosynthesis II:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[previous_meneco]]; tool: [[curation]]; comment: reaction added with meneco (previous version)
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: nb gene associated=0}}
+
* METANETX-RXN : MNXR97141
−
{{#set: nb pathway associated=0}}
+
* RHEA:
−
{{#set: reconstruction category=manual}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
−
{{#set: reconstruction tool=curation}}
+
* LIGAND-RXN:
−
{{#set: reconstruction comment=reaction added with meneco (previous version)}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
−
{{#set: reconstruction source=previous_meneco}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P19572 P19572]
 +
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
 +
** [http://www.uniprot.org/uniprot/P44316 P44316]
 +
** [http://www.uniprot.org/uniprot/P56129 P56129]
 +
** [http://www.uniprot.org/uniprot/O67262 O67262]
 +
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
 +
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
 +
** [http://www.uniprot.org/uniprot/P00861 P00861]
 +
** [http://www.uniprot.org/uniprot/O27390 O27390]
 +
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
 +
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
 +
** [http://www.uniprot.org/uniprot/O29458 O29458]
 +
** [http://www.uniprot.org/uniprot/P41023 P41023]
 +
** [http://www.uniprot.org/uniprot/P23630 P23630]
 +
** [http://www.uniprot.org/uniprot/P09890 P09890]
 +
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 +
** [http://www.uniprot.org/uniprot/O05321 O05321]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=diaminopimelate decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.20}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction DIAMINOPIMDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • diaminopimelate decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2942, L-lysine biosynthesis III:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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