Difference between revisions of "DIAMINOPIMDECARB-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-14789 == * direction: ** left-to-right * common-name: ** fatty acyl-coa oxidase ** acyl-coa oxidase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction RXN-3521 == * direction: ** left-to-right * common-name: ** l-ascorbate peroxidase * synonymous: ** l-ascorbic acid-specific peroxidase ** as...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14789 ==
+
== Reaction RXN-3521 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fatty acyl-coa oxidase
+
** l-ascorbate peroxidase
−
** acyl-coa oxidase
+
* synonymous:
−
* ec-number:
+
** l-ascorbic acid-specific peroxidase
−
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
+
** ascorbic acid peroxidase
 +
** l-ascorbic acid peroxidase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-15677]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-15661]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
* 2 [[ASCORBATE]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CPD-318]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19669]]
+
* Gene: [[SJ04585]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07452]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13468]]
+
* Gene: [[SJ14435]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03090]]
+
* Gene: [[SJ17253]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07451]]
+
* Gene: [[SJ16420]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 31: Line 29:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7338]], 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast):
+
* [[PWY-2261]], ascorbate glutathione cycle:
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R09540 R09540]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30266 30266]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P48534 P48534]
 +
** [http://www.uniprot.org/uniprot/Q7M287 Q7M287]
 +
** [http://www.uniprot.org/uniprot/O49159 O49159]
 +
** [http://www.uniprot.org/uniprot/Q7M3G0 Q7M3G0]
 +
** [http://www.uniprot.org/uniprot/Q05431 Q05431]
 +
** [http://www.uniprot.org/uniprot/Q43824 Q43824]
 +
** [http://www.uniprot.org/uniprot/Q41772 Q41772]
 +
** [http://www.uniprot.org/uniprot/Q41371 Q41371]
 +
** [http://www.uniprot.org/uniprot/Q42661 Q42661]
 +
** [http://www.uniprot.org/uniprot/Q42564 Q42564]
 +
** [http://www.uniprot.org/uniprot/O46921 O46921]
 +
** [http://www.uniprot.org/uniprot/P93404 P93404]
 +
** [http://www.uniprot.org/uniprot/Q9FE01 Q9FE01]
 +
** [http://www.uniprot.org/uniprot/O65634 O65634]
 +
** [http://www.uniprot.org/uniprot/Q39843 Q39843]
 +
** [http://www.uniprot.org/uniprot/O49122 O49122]
 +
** [http://www.uniprot.org/uniprot/O49822 O49822]
 +
** [http://www.uniprot.org/uniprot/Q42459 Q42459]
 +
** [http://www.uniprot.org/uniprot/Q39780 Q39780]
 +
** [http://www.uniprot.org/uniprot/Q96399 Q96399]
 +
** [http://www.uniprot.org/uniprot/O81333 O81333]
 +
** [http://www.uniprot.org/uniprot/O81603 O81603]
 +
** [http://www.uniprot.org/uniprot/O81604 O81604]
 +
** [http://www.uniprot.org/uniprot/Q42909 Q42909]
 +
** [http://www.uniprot.org/uniprot/Q9STM9 Q9STM9]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fatty acyl-coa oxidase|acyl-coa oxidase}}
+
{{#set: common-name=l-ascorbate peroxidase}}
−
{{#set: ec-number=ec-1.3.3.6}}
+
{{#set: synonymous=l-ascorbic acid peroxidase|ascorbic acid peroxidase|l-ascorbic acid-specific peroxidase}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:04, 5 January 2021

Reaction RXN-3521

  • direction:
    • left-to-right
  • common-name:
    • l-ascorbate peroxidase
  • synonymous:
    • l-ascorbic acid-specific peroxidase
    • ascorbic acid peroxidase
    • l-ascorbic acid peroxidase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2261, ascorbate glutathione cycle:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DIAMINOPIMDECARB-RXN&oldid=63429"