Difference between revisions of "DIAMINOPIMELATE-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction UDPNACETYLMURAMATEDEHYDROG-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1.98 ec-1.3.1.98] == Reactio...")
(Created page with "Category:reaction == Reaction RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45. == * direction: ** reversible == Reaction formula == * 1.0 CPD-4101[c] '''+'''...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UDPNACETYLMURAMATEDEHYDROG-RXN ==
+
== Reaction RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45. ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.3.1.98 ec-1.3.1.98]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[UDP-N-ACETYLMURAMATE]][c]
+
* 1.0 [[CPD-4101]][c] '''+''' 1.0 [[DIMETHYL-GLYCINE]][c] '''<=>''' 1.0 [[BETAINE]][c] '''+''' 1.0 [[EPISTEROL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[SJ03311]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21113]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21111]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21294]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19720]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03315]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21114]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20537]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY0-1261]], anhydromuropeptides recycling I:
 
−
** '''3''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7953]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing):
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing):
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12250 12250]
+
{{#set: nb gene associated=0}}
−
* LIGAND-RXN:
+
{{#set: nb pathway associated=0}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03192 R03192]
+
{{#set: reconstruction category=gap-filling}}
−
* UNIPROT:
+
{{#set: reconstruction tool=meneco}}
−
** [http://www.uniprot.org/uniprot/Q9PM01 Q9PM01]
+
{{#set: reconstruction comment=added for gapfilling}}
−
** [http://www.uniprot.org/uniprot/Q9JV28 Q9JV28]
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
** [http://www.uniprot.org/uniprot/P44605 P44605]
 
−
** [http://www.uniprot.org/uniprot/P08373 P08373]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: ec-number=ec-1.3.1.98}}
 
−
{{#set: nb gene associated=8}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=orthology}}
 
−
{{#set: reconstruction tool=pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 11:22, 15 January 2021

Reaction RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45.

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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