Difference between revisions of "DIAMINOPIMELATE-DEHYDROGENASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction PORPHOBILSYNTH-RXN == * direction: ** left-to-right * common-name: ** porphobilinogen synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
(Created page with "Category:reaction == Reaction DIAMINOPIMELATE-DEHYDROGENASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.16 ec-1.4.1.16] == Reactio...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PORPHOBILSYNTH-RXN ==
+
== Reaction DIAMINOPIMELATE-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** porphobilinogen synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24]
+
** [http://enzyme.expasy.org/EC/1.4.1.16 ec-1.4.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ALPHA-AMINO-EPSILON-KETO-PIMELATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07541]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07531]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
+
* [[PWY-2942]], L-lysine biosynthesis III:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[previous_meneco]]; tool: [[curation]]; comment: reaction added with meneco (previous version)
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR107706
−
* METANETX-RXN : MNXR103095
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13564 13564]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02755 R02755]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06214 P06214]
+
** [http://www.uniprot.org/uniprot/P04964 P04964]
−
** [http://www.uniprot.org/uniprot/P13716 P13716]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
+
{{#set: ec-number=ec-1.4.1.16}}
−
** [http://www.uniprot.org/uniprot/P30124 P30124]
+
{{#set: nb gene associated=0}}
−
** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P30950 P30950]
+
{{#set: reconstruction category=manual}}
−
** [http://www.uniprot.org/uniprot/Q60178 Q60178]
+
{{#set: reconstruction tool=curation}}
−
** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
+
{{#set: reconstruction comment=reaction added with meneco (previous version)}}
−
** [http://www.uniprot.org/uniprot/Q59295 Q59295]
+
{{#set: reconstruction source=previous_meneco}}
−
** [http://www.uniprot.org/uniprot/Q02250 Q02250]
 
−
** [http://www.uniprot.org/uniprot/P10518 P10518]
 
−
** [http://www.uniprot.org/uniprot/Q43148 Q43148]
 
−
** [http://www.uniprot.org/uniprot/Q42682 Q42682]
 
−
** [http://www.uniprot.org/uniprot/Q43058 Q43058]
 
−
** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 
−
** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 
−
** [http://www.uniprot.org/uniprot/P05373 P05373]
 
−
** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 
−
** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 
−
** [http://www.uniprot.org/uniprot/P43210 P43210]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=porphobilinogen synthase}}
 
−
{{#set: ec-number=ec-4.2.1.24}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
 

Latest revision as of 11:20, 18 March 2021

Reaction DIAMINOPIMELATE-DEHYDROGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2942, L-lysine biosynthesis III:
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DIAMINOPIMELATE-DEHYDROGENASE-RXN&oldid=141025"