Difference between revisions of "DIAMINOPIMELATE-DEHYDROGENASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.3-RXN 3.1.26.3-RXN] == * direction: ** left-to-right * common-name: ** ribonuclease iii ** r...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADDALT-RXN ADDALT-RXN] == * direction: ** left-to-right * common-name: ** deoxyadenosine deaminase...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.3-RXN 3.1.26.3-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADDALT-RXN ADDALT-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ribonuclease iii
+
** deoxyadenosine deaminase
−
** ribonuclease
+
** adenosine deaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3]
+
** [http://enzyme.expasy.org/EC/3.5.4.4 ec-3.5.4.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c] '''+''' 2 [[mRNA-Fragments]][c]
+
* 1 [[DEOXYADENOSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DEOXYINOSINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ17141]]
+
* Gene: [[SJ04837]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ01852]]
+
* Gene: [[SJ12082]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ20035]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15619]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ22508]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08973]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ17143]]
+
* Gene: [[SJ11072]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ08968]]
+
* Gene: [[SJ17056]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10996]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7179-1]], purine deoxyribonucleosides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7179-1 PWY-7179-1]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7179]], purine deoxyribonucleosides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7179 PWY-7179]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28190 28190]
−
** [http://www.uniprot.org/uniprot/P51833 P51833]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02556 R02556]
−
** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3]
 
−
** [http://www.uniprot.org/uniprot/P44441 P44441]
 
−
** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0]
 
−
** [http://www.uniprot.org/uniprot/P09155 P09155]
 
−
** [http://www.uniprot.org/uniprot/Q52698 Q52698]
 
−
** [http://www.uniprot.org/uniprot/Q49034 Q49034]
 
−
** [http://www.uniprot.org/uniprot/O69469 O69469]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ribonuclease iii|ribonuclease}}
+
{{#set: common-name=deoxyadenosine deaminase|adenosine deaminase}}
−
{{#set: ec-number=ec-3.1.26.3}}
+
{{#set: ec-number=ec-3.5.4.4}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=7}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 09:31, 27 August 2019

Reaction ADDALT-RXN

  • direction:
    • left-to-right
  • common-name:
    • deoxyadenosine deaminase
    • adenosine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7179-1, purine deoxyribonucleosides degradation II: PWY-7179-1
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7179, purine deoxyribonucleosides degradation I: PWY-7179
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DIAMINOPIMELATE-DEHYDROGENASE-RXN&oldid=36849"