Difference between revisions of "DIMETHUROPORDEHYDROG-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCPDIESTER-RXN GLYCPDIESTER-RXN] == * direction: ** left-to-right * common-name: ** glycerophosph...")
 
(Created page with "Category:reaction == Reaction DIMETHUROPORDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** precorrin-2 dehydrogenase * ec-number: ** [http://enzyme.expasy.o...")
 
(9 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCPDIESTER-RXN GLYCPDIESTER-RXN] ==
+
== Reaction DIMETHUROPORDEHYDROG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glycerophosphoryl diester phosphodiesterase, periplasmic
+
** precorrin-2 dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.46 ec-3.1.4.46]
+
** [http://enzyme.expasy.org/EC/1.3.1.76 ec-1.3.1.76]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Glycerophosphodiesters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DIHYDROSIROHYDROCHLORIN]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SIROHYDROCHLORIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16458]]
+
* Gene: [[SJ12313]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00999]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6952]], glycerophosphodiester degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6952 PWY-6952]
+
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5196]], factor 430 biosynthesis:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5194]], siroheme biosynthesis:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR104373
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12970 12970]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15613 15613]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00857 R00857]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03947 R03947]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q99387 Q99387]
 
−
** [http://www.uniprot.org/uniprot/P10908 P10908]
 
−
** [http://www.uniprot.org/uniprot/Q06282 Q06282]
 
−
** [http://www.uniprot.org/uniprot/Q9V208 Q9V208]
 
−
** [http://www.uniprot.org/uniprot/P09394 P09394]
 
−
** [http://www.uniprot.org/uniprot/Q9S3K5 Q9S3K5]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glycerophosphoryl diester phosphodiesterase, periplasmic}}
+
{{#set: common-name=precorrin-2 dehydrogenase}}
−
{{#set: ec-number=ec-3.1.4.46}}
+
{{#set: ec-number=ec-1.3.1.76}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction DIMETHUROPORDEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • precorrin-2 dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
    • 4 reactions found over 15 reactions in the full pathway
  • PWY-5196, factor 430 biosynthesis:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5194, siroheme biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR104373
  • RHEA:
  • LIGAND-RXN:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DIMETHUROPORDEHYDROG-RXN&oldid=141355"