Difference between revisions of "DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN"

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(Created page with "Category:reaction == Reaction PHOSCHOL-RXN == * direction: ** left-to-right * common-name: ** n-acylphosphatidylethanolamine-specific phospholipase d * ec-number: ** [http...")
(Created page with "Category:reaction == Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** diphosphomevalonate decarboxylase * ec-number: ** [ht...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSCHOL-RXN ==
+
== Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** n-acylphosphatidylethanolamine-specific phospholipase d
+
** diphosphomevalonate decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.4 ec-3.1.4.4]
+
** [http://enzyme.expasy.org/EC/4.1.1.33 ec-4.1.1.33]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHATIDYLCHOLINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CHOLINE]][c] '''+''' 1 [[L-PHOSPHATIDATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CPD-641]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08019]]
+
* Gene: [[SJ05356]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7039]], phosphatidate metabolism, as a signaling molecule:
+
* [[PWY-7391]], isoprene biosynthesis II (engineered):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-3561]], choline biosynthesis III:
+
* [[PWY-922]], mevalonate pathway I (eukaryotes and bacteria):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[LIPASYN-PWY]], phospholipases:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97776
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14446 14446]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23733 23733]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01310 R01310]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01121 R01121]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P20626 P20626]
+
** [http://www.uniprot.org/uniprot/P32377 P32377]
−
** [http://www.uniprot.org/uniprot/Q9Z4Q0 Q9Z4Q0]
+
** [http://www.uniprot.org/uniprot/Q9U2A1 Q9U2A1]
−
** [http://www.uniprot.org/uniprot/P93844 P93844]
+
** [http://www.uniprot.org/uniprot/Q9U294 Q9U294]
−
** [http://www.uniprot.org/uniprot/Q43007 Q43007]
+
** [http://www.uniprot.org/uniprot/O13963 O13963]
−
** [http://www.uniprot.org/uniprot/Q43270 Q43270]
+
** [http://www.uniprot.org/uniprot/Q9M381 Q9M381]
−
** [http://www.uniprot.org/uniprot/P93400 P93400]
+
** [http://www.uniprot.org/uniprot/O23722 O23722]
−
** [http://www.uniprot.org/uniprot/Q9T052 Q9T052]
 
−
** [http://www.uniprot.org/uniprot/Q9T053 Q9T053]
 
−
** [http://www.uniprot.org/uniprot/Q41142 Q41142]
 
−
** [http://www.uniprot.org/uniprot/O04865 O04865]
 
−
** [http://www.uniprot.org/uniprot/P70496 P70496]
 
−
** [http://www.uniprot.org/uniprot/O74136 O74136]
 
−
** [http://www.uniprot.org/uniprot/O08684 O08684]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=n-acylphosphatidylethanolamine-specific phospholipase d}}
+
{{#set: common-name=diphosphomevalonate decarboxylase}}
−
{{#set: ec-number=ec-3.1.4.4}}
+
{{#set: ec-number=ec-4.1.1.33}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • diphosphomevalonate decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7391, isoprene biosynthesis II (engineered):
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-922, mevalonate pathway I (eukaryotes and bacteria):
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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