Difference between revisions of "DNA-LIGASE-ATP-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTKIN-RXN GLUTKIN-RXN] == * direction: ** left-to-right * common-name: ** glutamate 5-kinase * ec...")
(Created page with "Category:reaction == Reaction DNA-LIGASE-ATP-RXN == * direction: ** left-to-right * common-name: ** dna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.7 e...")
 
(7 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTKIN-RXN GLUTKIN-RXN] ==
+
== Reaction DNA-LIGASE-ATP-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutamate 5-kinase
+
** dna ligase (atp)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.2.11 ec-2.7.2.11]
+
** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7]
 +
** [http://enzyme.expasy.org/EC/6.5.1.1 ec-6.5.1.1]
 +
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[L-GLUTAMATE-5-P]][c]
+
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02923]]
+
* Gene: [[SJ13521]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15543]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06433]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ22406]]
+
* Gene: [[SJ16080]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09366]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PROSYN-PWY]], L-proline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PROSYN-PWY PROSYN-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14878 14878]
+
* METANETX-RXN : MNXR115853
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00239 R00239]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PJ29 Q9PJ29]
+
** [http://www.uniprot.org/uniprot/P12000 P12000]
−
** [http://www.uniprot.org/uniprot/Q9CF72 Q9CF72]
+
** [http://www.uniprot.org/uniprot/P18858 P18858]
−
** [http://www.uniprot.org/uniprot/Q9JUK7 Q9JUK7]
+
** [http://www.uniprot.org/uniprot/P35970 P35970]
−
** [http://www.uniprot.org/uniprot/P43763 P43763]
+
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
−
** [http://www.uniprot.org/uniprot/P0A7B5 P0A7B5]
+
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
−
** [http://www.uniprot.org/uniprot/P17856 P17856]
+
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
−
** [http://www.uniprot.org/uniprot/P32264 P32264]
+
** [http://www.uniprot.org/uniprot/P49917 P49917]
−
** [http://www.uniprot.org/uniprot/P73071 P73071]
+
** [http://www.uniprot.org/uniprot/P49916 P49916]
−
** [http://www.uniprot.org/uniprot/O04226 O04226]
+
** [http://www.uniprot.org/uniprot/P37913 P37913]
−
** [http://www.uniprot.org/uniprot/O13810 O13810]
+
** [http://www.uniprot.org/uniprot/P51892 P51892]
−
** [http://www.uniprot.org/uniprot/P46546 P46546]
+
** [http://www.uniprot.org/uniprot/P16272 P16272]
 +
** [http://www.uniprot.org/uniprot/P33798 P33798]
 +
** [http://www.uniprot.org/uniprot/P00970 P00970]
 +
** [http://www.uniprot.org/uniprot/P00969 P00969]
 +
** [http://www.uniprot.org/uniprot/P04819 P04819]
 +
** [http://www.uniprot.org/uniprot/P19088 P19088]
 +
** [http://www.uniprot.org/uniprot/P07717 P07717]
 +
** [http://www.uniprot.org/uniprot/P26813 P26813]
 +
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
 +
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
 +
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
 +
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
 +
** [http://www.uniprot.org/uniprot/P20492 P20492]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamate 5-kinase}}
+
{{#set: common-name=dna ligase (atp)}}
−
{{#set: ec-number=ec-2.7.2.11}}
+
{{#set: ec-number=ec-6.5.1.1|ec-6.5.1.7|ec-6.5.1.6}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction DNA-LIGASE-ATP-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=DNA-LIGASE-ATP-RXN&oldid=141769"