Difference between revisions of "DNA-N4-Methylcytosine"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] == * direction: ** reversible * common-name: ** formate:tetrah...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** left-to-right * common-name: ** riboflavi...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** formate:tetrahydropteroylpolyglutamate ligase
+
** riboflavin synthase
−
** formate-tetrahydrofolate ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.3 ec-6.3.4.3]
+
** [http://enzyme.expasy.org/EC/2.5.1.9 ec-2.5.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[Pi]][c]
+
* 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12991]]
+
* Gene: [[SJ11166]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07523]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
+
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
** '''5''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
+
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20224 20224]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20773 20773]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
+
** [http://www.uniprot.org/uniprot/P11998 P11998]
−
** [http://www.uniprot.org/uniprot/P13419 P13419]
+
** [http://www.uniprot.org/uniprot/P16440 P16440]
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
+
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
+
** [http://www.uniprot.org/uniprot/O24854 O24854]
−
** [http://www.uniprot.org/uniprot/P21164 P21164]
+
** [http://www.uniprot.org/uniprot/O26237 O26237]
−
** [http://www.uniprot.org/uniprot/P28723 P28723]
+
** [http://www.uniprot.org/uniprot/P66037 P66037]
−
** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
+
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
−
** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
+
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
−
** [http://www.uniprot.org/uniprot/Q07064 Q07064]
+
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
+
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P45273 P45273]
−
{{#set: common-name=formate:tetrahydropteroylpolyglutamate ligase|formate-tetrahydrofolate ligase}}
+
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
−
{{#set: ec-number=ec-6.3.4.3}}
+
** [http://www.uniprot.org/uniprot/O66529 O66529]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
−
{{#set: nb pathway associated=5}}
+
** [http://www.uniprot.org/uniprot/O28856 O28856]
−
{{#set: reconstruction category=orthology|annotation}}
+
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
 +
** [http://www.uniprot.org/uniprot/P61714 P61714]
 +
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
 +
** [http://www.uniprot.org/uniprot/P38145 P38145]
 +
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
 +
** [http://www.uniprot.org/uniprot/P73527 P73527]
 +
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
 +
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
 +
** [http://www.uniprot.org/uniprot/P50854 P50854]
 +
** [http://www.uniprot.org/uniprot/P50856 P50856]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=riboflavin synthase}}
 +
{{#set: ec-number=ec-2.5.1.9}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • riboflavin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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