Difference between revisions of "DNA-containing-abasic-Sites"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2584 RXN0-2584] == * direction: ** left-to-right * common-name: ** uracil-dna glycosylase * ec...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9363 RXN-9363] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2584 RXN0-2584] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9363 RXN-9363] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** uracil-dna glycosylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.2.27 ec-3.2.2.27]
+
** [http://enzyme.expasy.org/EC/2.1.1.163 ec-2.1.1.163]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DNA-with-Uracils]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c] '''+''' 1 [[URACIL]][c]
+
* 1 [[CPD-12121]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-12129]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03435]]
+
* Gene: [[SJ07072]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19780]]
+
* Gene: [[SJ02842]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19782]]
+
* Gene: [[SJ00609]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11757]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02693]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20751]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5892]], menaquinol-12 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5892 PWY-5892]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44793 44793]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=uracil-dna glycosylase}}
+
{{#set: ec-number=ec-2.1.1.163}}
−
{{#set: ec-number=ec-3.2.2.27}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=0}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN-9363

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5892, menaquinol-12 biosynthesis: PWY-5892
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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