Difference between revisions of "DNA-with-mismatch"

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(Created page with "Category:gene == Gene SJ07066 == * transcription-direction: ** positive * right-end-position: ** 180256 * left-end-position: ** 177130 * centisome-position: ** 38.146286...")
 
(Created page with "Category:gene == Gene SJ21798 == * transcription-direction: ** negative * right-end-position: ** 41506 * left-end-position: ** 24465 * centisome-position: ** 4.1395726...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ07066 ==
+
== Gene SJ21798 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 180256
+
** 41506
 
* left-end-position:
 
* left-end-position:
−
** 177130
+
** 24465
 
* centisome-position:
 
* centisome-position:
−
** 38.146286    
+
** 4.1395726    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PPPGO]]
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[PROTOPORGENOXI-RXN]]
−
* [[DOLICHYLDIPHOSPHATASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* [[PHOSPHATIDATE-PHOSPHATASE-RXN]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
** Category: [[annotation]]
+
* [[RXN-17517]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16030]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16121]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17730]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[TRIGLSYN-PWY]]
+
* [[PWY-7159]]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6453]]
+
* [[PWY0-1415]]
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7782]]
+
* [[CHLOROPHYLL-SYN]]
−
** '''11''' reactions found over '''16''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[HEME-BIOSYNTHESIS-II]]
−
{{#set: right-end-position=180256}}
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
{{#set: left-end-position=177130}}
+
* [[PWY-7766]]
−
{{#set: centisome-position=38.146286   }}
+
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=41506}}
 +
{{#set: left-end-position=24465}}
 +
{{#set: centisome-position=4.1395726   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=5}}

Revision as of 14:24, 26 August 2019

Gene SJ21798

  • transcription-direction:
    • negative
  • right-end-position:
    • 41506
  • left-end-position:
    • 24465
  • centisome-position:
    • 4.1395726

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7159
    • 5 reactions found over 9 reactions in the full pathway
  • PWY0-1415
    • 5 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN
    • 6 reactions found over 9 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7766
    • 3 reactions found over 5 reactions in the full pathway




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